Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1227
         (753 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.49 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.86 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   3.5  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   4.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   8.0  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   8.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 133  PKEWHKDANKSPDHDQ 180
            PK W  D NK PD D+
Sbjct: 2445 PKCWQVDCNKGPDSDK 2460



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 133  PKEWHKDANKSPDHDQ 180
            PK W  D  K PD D+
Sbjct: 1522 PKCWQVDCKKGPDSDK 1537



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 133  PKEWHKDANKSPDHDQ 180
            PK W  D NK P  D+
Sbjct: 1947 PKCWQVDCNKGPASDK 1962



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 686  CCGYPHCLWLMLEI 645
            C  Y HCLW   E+
Sbjct: 1291 CTRYLHCLWGKYEV 1304


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = +2

Query: 551  GEWRHDPTVKVIDNGMGSKNNLVTVKMSDFEVFQALAKDSEGIHSSAQTEYSQEIPQ 721
            G+ R+    +++ NG+ S  ++   + SD  +F  +A ++ G   ++     QE+P+
Sbjct: 841  GDNRYTIREEILANGVLSGLSIKRTERSDSALFTCVATNAFGSDDTSINMIVQEVPE 897


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/56 (25%), Positives = 21/56 (37%)
 Frame = +2

Query: 563 HDPTVKVIDNGMGSKNNLVTVKMSDFEVFQALAKDSEGIHSSAQTEYSQEIPQSKP 730
           H P  +VID+ +       TV +  F       +D +  H      YS    +S P
Sbjct: 156 HGPITRVIDSKVVDSRKNTTVSIDVFPAVARWMQDPKTNHGILIVVYSIGAKKSPP 211


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 89  YNHLKIKWGMPEVTNPKNGIKML 157
           +N L I W  PE  + +N I +L
Sbjct: 138 FNGLDIDWEYPEAKDKENFITLL 160


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 394 YQQFSNGKEVENKYLFLEHLQ 456
           YQQ SN + V+N   F +  Q
Sbjct: 501 YQQLSNYRNVDNSAKFKDGFQ 521


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 428 TSIYFWNIYRLENYSHGKITW*FCYN 505
           T++ FW   ++ N ++   TW   +N
Sbjct: 252 TNLLFWEFDQIVNVAYRMETWNVVFN 277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,035
Number of Sequences: 336
Number of extensions: 4557
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)