Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1227
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15627| Best HMM Match : AMPKBI (HMM E-Value=3e-36)                  52   5e-07
SB_35358| Best HMM Match : 7tm_1 (HMM E-Value=0.016)                   34   0.11 
SB_48507| Best HMM Match : TolA (HMM E-Value=1)                        30   2.3  
SB_48457| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_29837| Best HMM Match : MobC (HMM E-Value=6.8)                      29   3.1  
SB_9586| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_37265| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_6428| Best HMM Match : DUF652 (HMM E-Value=8.7)                     29   4.1  
SB_38940| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                       28   7.1  
SB_57095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_6098| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=1e-39)          28   9.4  
SB_51988| Best HMM Match : bZIP_2 (HMM E-Value=7.3e-13)                28   9.4  

>SB_15627| Best HMM Match : AMPKBI (HMM E-Value=3e-36)
          Length = 255

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 21/40 (52%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
 Frame = +3

Query: 393 LPTVFKWEGGGKQVFISGTFTDWKT-IPMVKSHGDFVTIM 509
           +PTV +WE GG++V +SG+F DWKT IPM  S+ +F  I+
Sbjct: 69  IPTVIRWENGGRKVLLSGSFNDWKTRIPMNYSNNEFTAII 108



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 587 DNGMGSKNNLVTVKMSDFEVFQALAKDS 670
           ++  G +NN+++V+ +D +VF AL  D+
Sbjct: 116 NDNFGGRNNVISVRKTDMDVFDALDTDA 143


>SB_35358| Best HMM Match : 7tm_1 (HMM E-Value=0.016)
          Length = 133

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -3

Query: 544 KIFVLMFTFW*IIIVTKSPCDFTMGIVFQSVNVPEINTCFPPPSHLKTVGNTLISSTILL 365
           K+F+++ + W    VT SP  F   +   +      N  +P P H +     L S T L+
Sbjct: 21  KVFIMLVSAWLAAFVTGSPEIFAFQLAQNTTEHLPCNEYWPQPIHRQIYTMVLFSCTYLV 80

Query: 364 PSVRVF 347
           P + +F
Sbjct: 81  PLLIIF 86


>SB_48507| Best HMM Match : TolA (HMM E-Value=1)
          Length = 649

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 291 YTKAVPESDIEYTEQRERSNTLTDGSKIVD 380
           Y K V E DI+  +  +RS+   DG KIVD
Sbjct: 292 YQKEVAEDDIDDMKAEKRSDVEEDGKKIVD 321


>SB_48457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 234 RR*SK*SDDDNNIEDGAPYYTKAVPESDIEY 326
           RR S+ S D+N   D AP Y +A+ +S  EY
Sbjct: 19  RRLSEISCDENTFNDAAPQYQEALRKSGYEY 49


>SB_29837| Best HMM Match : MobC (HMM E-Value=6.8)
          Length = 327

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 234 RR*SK*SDDDNNIEDGAPYYTKAVPESDIEY 326
           RR S+ S D+N   D AP Y +A+ +S  EY
Sbjct: 230 RRLSEISCDENTFNDAAPQYQEALRKSGYEY 260


>SB_9586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 234  RR*SK*SDDDNNIEDGAPYYTKAVPESDIEYTEQRERSNT 353
            +R S  S D    +  AP Y KA  ES   YT   E +NT
Sbjct: 1024 KRLSTLSSDKETFDQAAPPYQKAPDESGYNYTLHYEPNNT 1063


>SB_37265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 234 RR*SK*SDDDNNIEDGAPYYTKAVPESDIEYTEQRERSNTLTD 362
           RR S  S D  + +  AP Y KA+ +S   YT  R   NT+T+
Sbjct: 95  RRLSALSSDQASFDQTAPPYQKAIDDSGYNYT-LRYEPNTVTN 136


>SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 922

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 234 RR*SK*SDDDNNIEDGAPYYTKAVPESDIEYTEQRERSNTLTD 362
           RR S  S D  + +  AP Y KA+ +S   YT  R   NT+T+
Sbjct: 711 RRLSALSSDQASFDQTAPPYQKAIDDSGYNYT-LRYEPNTVTN 752


>SB_6428| Best HMM Match : DUF652 (HMM E-Value=8.7)
          Length = 98

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 530 QYKYFVDGEWRHDPTVKVIDNGMGSKNNLVTVKMSD 637
           QY+Y+  G++ HD TV  +D G  + N  VTV   D
Sbjct: 49  QYQYWDKGKYAHDVTVPTLDKGKYALN--VTVPTLD 82


>SB_38940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +2

Query: 401 SFQMGRRWKTSIYFWNIYRLENYSHGKITW*F---CYNNDLPEGEHQ 532
           SF+   RW  ++ FWN+ + E     K+T  F    YN D  E E +
Sbjct: 27  SFKSSSRWLGALVFWNVEQSEMQKIRKLTARFEEGRYNRDTIEDESE 73


>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 279 GAPYYTKAVPESDIEYTEQRERSNTLTDGSKI 374
           G PYYT+ V E  +EY+   ++  +  DG+ +
Sbjct: 697 GRPYYTQGVTEYTVEYSLTGDQWQSYQDGNGV 728


>SB_57095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 255 DDDNNIEDGAPYYTKAVPESDIEYTEQRERSNT 353
           ++D  +  G P   +A PE + E  E+RE  +T
Sbjct: 79  EEDPEVNGGEPGENEAEPEGETEEAEEREEEST 111


>SB_6098| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=1e-39)
          Length = 463

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +3

Query: 303 VPESDIEYTEQRER-SNTLTDGSKIVDDIKVLPTVFKWEGGGKQVFISGTFTDWKTIPMV 479
           VPE  I + +  +  S+TLT+      D++ L       G  +  F    + DW ++ M 
Sbjct: 68  VPEQSIVFLKTHKTGSSTLTNIFNRFADLRELKVALPLPGYNR--FKWPLYFDWSSVDMY 125

Query: 480 KSHGDFVTIM 509
           + +GD+  ++
Sbjct: 126 RLNGDYANVL 135


>SB_51988| Best HMM Match : bZIP_2 (HMM E-Value=7.3e-13)
          Length = 244

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +3

Query: 261 DNNIEDG--APYYTKAVPESDIEYTEQRERSNTLTDGSKIVDD 383
           DN+  DG   P  ++++P+S  E+T    R + ++ GS++  D
Sbjct: 41  DNSDFDGNLGPLLSESIPKSINEFTSSTSRGSPVSPGSQVSSD 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,176,811
Number of Sequences: 59808
Number of extensions: 528943
Number of successful extensions: 1358
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)