Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1226
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    42   1e-04
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   1.7  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   3.0  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   3.0  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    27   3.0  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   4.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   4.0  
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    26   4.0  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   6.9  

>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
 Frame = +3

Query: 258 DDNNIEDGAPYYTKAVPESDIEYTEQRERSNTLTDGSKIVDDIK--VLPTVFKWEGGGKQ 431
           DDN  E G    ++        +T++R +    T G K         +PT+ +W GGG+ 
Sbjct: 56  DDNQQEGGNNRTSQNGTSGSSGHTKRRSQ----TSGKKTHQPYSGPCVPTIIRWRGGGEV 111

Query: 432 VFISGTFTDW-KTIPMVKSHGDFVTIM 509
           V+++G+F+ W K I ++KS  D+  ++
Sbjct: 112 VYVTGSFSRWKKKIQLLKSE-DYTVLL 137


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 156  SIFMPFFGLVTSGIPHLIFKWL 91
            ++ M  FG +T  IPHLI+ W+
Sbjct: 1492 TLLMLLFGTMTVWIPHLIYFWI 1513


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 153  IFMPFFGLVTSGIPHLIFKWL 91
            ++M  FG +T+ +PH I+ W+
Sbjct: 1335 MYMLLFGSITAWLPHYIYFWI 1355


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 115 NAGSNQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFDKKLDDDRS 249
           + G    K + K ANKS D+D    +P  EG +F +++ ++ D +
Sbjct: 213 SVGGGGRKLFRKVANKSSDYDPDLCAPRTEG-SFIYEEFMNVDNA 256


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 80  LHTYNHLKIKWGMPEVTNPKNG 145
           +H     KI W +P+  NPK+G
Sbjct: 397 VHDLTGAKISWALPKPRNPKHG 418


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = -3

Query: 132 LVTSGIPHLIFKWL--YVCRFV 73
           L+T G+ +LIF+WL  Y  RFV
Sbjct: 176 LLTLGLAYLIFRWLPKYFIRFV 197


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 195  WR*RSLIMIRRFVSIFMPFFGLVTSGIPHLIFKWLYVCRF 76
            W  RS +     +S+F+  F     G+   I  W Y C+F
Sbjct: 984  WHYRSYVHGNSRISVFLESFSCPVPGLEEKIIMWSY-CKF 1022


>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 450 FTDWKTIPMVKSHGDFV 500
           F+DW TIP +  +G+FV
Sbjct: 89  FSDWPTIPQLYINGEFV 105


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 424 PPPSHLKTVGNTLISSTILLPSVRVFDLSRC 332
           PP S+ +T+ +TL++ ++ L  + +  L RC
Sbjct: 191 PPESYFRTIKSTLLAISMFLGFITLTWLLRC 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,642
Number of Sequences: 5004
Number of extensions: 60811
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)