Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1226
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124... 40 0.001
07_03_1739 - 29148685-29149017,29149564-29149726,29149844-291500... 38 0.007
04_03_0807 - 19860041-19860132,19860248-19860347,19861101-198611... 38 0.009
03_05_0730 + 27208293-27208813,27209052-27209173,27210429-272104... 37 0.012
05_05_0310 - 23991461-23991652,23991780-23991965,23992813-239930... 37 0.015
03_02_0815 + 11477618-11477845,11478206-11478337,11480227-114804... 34 0.082
03_01_0052 - 450258-450285,450345-450457,450540-450746,451021-45... 34 0.11
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464... 33 0.14
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 30 1.8
02_01_0284 + 1907249-1907665,1907816-1907859,1909508-1909546,190... 29 4.1
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 28 5.4
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 28 7.1
04_03_0963 + 21285160-21285579,21286585-21286635,21287017-212875... 28 7.1
>03_06_0744 +
35910512-35910569,35911145-35911325,35912332-35912419,
35912541-35912726,35913591-35913725,35913803-35913862,
35914609-35914698,35915384-35915515,35916039-35916183,
35916266-35916439,35916629-35916692,35916778-35916847,
35917328-35917445,35918258-35918280,35918398-35918499,
35919831-35920250,35920327-35920563
Length = 760
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +2
Query: 512 LPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNL 616
L G HQYK+ VDGEWRHD I G N L
Sbjct: 103 LSPGIHQYKFCVDGEWRHDERQPTITGDYGVVNTL 137
Score = 35.9 bits (79), Expect = 0.027
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 393 LPTVFKWEGGGKQVFISGTFTDW-KTIPMVKSHG 491
+PT F W GGK+V+++G+FT W + +PM G
Sbjct: 59 VPTRFVWPYGGKRVYLTGSFTRWTEHLPMSPVEG 92
>07_03_1739 -
29148685-29149017,29149564-29149726,29149844-29150028,
29150708-29150977
Length = 316
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 387 KVLPTVFKWEGGGKQVFISGTFTDWKTIPMVKSHGDFVTIMI 512
K++PT+ W GGK V+I G++ +WK+ +V G +M+
Sbjct: 125 KLIPTLLVWTLGGKNVYIEGSWDNWKSKQLVHKCGKDHCVML 166
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 497 CYNNDLPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNLVTV 625
C L G ++Y++ VDGE R P + MG+ +NL+ V
Sbjct: 163 CVMLGLASGVYRYRFIVDGERRFQPDRPREADIMGTISNLIDV 205
>04_03_0807 -
19860041-19860132,19860248-19860347,19861101-19861170,
19861344-19861407,19862531-19862704,19862805-19862946,
19863413-19863544,19863616-19863705,19864093-19864152,
19864227-19864343,19864441-19864611,19866909-19866984,
19867156-19867223
Length = 451
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 509 DLPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNLVTV 625
DLP G +QY++ VDG WR D T + + G +N V V
Sbjct: 41 DLPPGVYQYRFLVDGVWRCDETKPCVRDEYGLISNEVLV 79
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 405 FKWEGGGKQVFISGTFTDWKTIPM 476
F W GG++ G+FT W+ PM
Sbjct: 6 FAWPYGGQRASFCGSFTGWRECPM 29
>03_05_0730 +
27208293-27208813,27209052-27209173,27210429-27210477,
27210689-27210938,27211474-27211619,27211699-27211846,
27212544-27212612,27212641-27212784
Length = 482
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 530 QYKYFVDGEWRHDPTVKVIDNGMGSKNNLVTV 625
Q K+ VDG WR+DP ++ N G +NNL+TV
Sbjct: 451 QIKFIVDGVWRNDPLRPLVSNN-GHENNLLTV 481
>05_05_0310 -
23991461-23991652,23991780-23991965,23992813-23993094,
23993220-23993382,23993477-23993661,23994154-23994205,
23994292-23994392,23995244-23995417
Length = 444
Score = 36.7 bits (81), Expect = 0.015
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +3
Query: 387 KVLPTVFKWEGGGKQVFISGTFTDWKTIPMVKSHGDFVTIMI 512
K +PT+ W GG +VF+ G++ +W + +++ G TI++
Sbjct: 144 KGIPTLISWSQGGNEVFVEGSWDNWTSRRVLEKSGKDHTILL 185
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 512 LPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNLVTV 625
LP G + Y+ VDGE ++ P + + + G NL+ V
Sbjct: 187 LPSGVYHYRIIVDGEPKYVPELPHVADEGGQVANLLDV 224
>03_02_0815 +
11477618-11477845,11478206-11478337,11480227-11480408,
11480500-11480662,11481480-11481794
Length = 339
Score = 34.3 bits (75), Expect = 0.082
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 387 KVLPTVFKWEGGGKQVFISGTFTDWKT-IPMVKSHGDFVTIMI 512
K +P + W GGK V + G++ +WK+ PM KS D ++I
Sbjct: 154 KEIPVLIVWTLGGKNVSVEGSWDNWKSRKPMQKSGKDHSLLLI 196
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 512 LPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNLVTV 625
LP G ++Y++ VDGE + P + + MG+ NL+ V
Sbjct: 197 LPSGVYRYRFVVDGERKCLPDLPCETDIMGNAVNLLDV 234
>03_01_0052 -
450258-450285,450345-450457,450540-450746,451021-451080,
451281-451376,451495-451551,451786-451845,452774-452853,
454265-454367,454530-454571
Length = 281
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 518 EGEHQYKYFVDGEW-RHDPTVKVIDNGMGSKNNLVTV 625
EG ++YKY VDG+W +D K N G NN V V
Sbjct: 200 EGRYEYKYIVDGKWVCNDNEKKTKANADGHVNNYVQV 236
>08_02_0502 +
17844775-17845092,17845528-17845634,17846039-17846492,
17846623-17846694,17846804-17846925,17847079-17847294,
17847392-17847500,17847618-17847730,17847916-17848063,
17848274-17848396
Length = 593
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 512 LPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNLVTV 625
L G++ YK+ G+WRH ++ + G+ NN++ V
Sbjct: 500 LRHGKYYYKFIAGGQWRHSTSLPTETDEHGNVNNVIRV 537
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 29.9 bits (64), Expect = 1.8
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +3
Query: 291 YTKAVPESDIEYTEQRERSNTLTDGSKIVDDIKVLPTVFKWEGGGKQVFISGTFTDWKTI 470
YTK P I Y ++ L S DDI +L T+ G V TFT +I
Sbjct: 4991 YTKKCPPDIILYVDR------LDSWSNHFDDIPLLKTITTILGTSIWVNTVVTFTHANSI 5044
Query: 471 PMVKSHGDFVT--IMIYQKVNISTNILLMENGGMIL 572
P S+GD +T I Q+ +I + G M L
Sbjct: 5045 PPDNSNGDPMTYETFIAQRSHIVQQSIQQATGDMCL 5080
>02_01_0284 +
1907249-1907665,1907816-1907859,1909508-1909546,
1909791-1910112,1910803-1910892,1911541-1911609,
1911969-1912074,1912146-1912234,1912349-1912461,
1912555-1912657
Length = 463
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 509 DLPEGEHQYKYFVDGEWRHDPTVKVIDNGMGS-KNNLVTV 625
+L G ++ K+ VDGEWR + +G GS +NN++ V
Sbjct: 425 NLRPGRYEIKFLVDGEWRLSLEYPI--DGEGSMQNNILVV 462
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -3
Query: 267 YCHHPTTSIIV*LFIKREGFPFFGWR*RSLIMIRRFVSIFMPFFGLVTSGI 115
+ HHP V L + EG P + W L + + F P G VTSGI
Sbjct: 464 HVHHPNWWFRVRLCL--EGLPQYAWNRAGLEGVMVLSTFFPPGAGRVTSGI 512
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 127 NQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFD 225
N ++WH +N+ + + GP P G T+D
Sbjct: 526 NSVQQWHHRSNQQMEMEPGPMLPGGLGLGLTYD 558
>04_03_0963 +
21285160-21285579,21286585-21286635,21287017-21287502,
21287866-21287961
Length = 350
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +3
Query: 276 DGAPYYTKAVPESDIEYTEQRERSNTLTDGSKIVD---DIKVL-PTVF----KWEGGGKQ 431
D +PY+T V +++ + + E+SN+ + K V+ +KV PT+F K EG GK
Sbjct: 13 DESPYHTAVVTTNNLVRSIKAEKSNSSSSSGKPVETDIGLKVASPTMFGFNTKIEGTGKN 72
Query: 432 VFI 440
+ +
Sbjct: 73 MAV 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,878,143
Number of Sequences: 37544
Number of extensions: 359285
Number of successful extensions: 934
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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