Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1226
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15627| Best HMM Match : AMPKBI (HMM E-Value=3e-36) 52 4e-07
SB_35358| Best HMM Match : 7tm_1 (HMM E-Value=0.016) 34 0.084
SB_48507| Best HMM Match : TolA (HMM E-Value=1) 30 1.8
SB_48457| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_29837| Best HMM Match : MobC (HMM E-Value=6.8) 29 2.4
SB_9586| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_37265| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_38940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 28 5.5
SB_6428| Best HMM Match : DUF652 (HMM E-Value=8.7) 28 5.5
SB_57095| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_6098| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=1e-39) 28 7.3
SB_51988| Best HMM Match : bZIP_2 (HMM E-Value=7.3e-13) 28 7.3
SB_43088| Best HMM Match : SDF (HMM E-Value=4.1e-08) 27 9.7
SB_24309| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_15627| Best HMM Match : AMPKBI (HMM E-Value=3e-36)
Length = 255
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/40 (52%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Frame = +3
Query: 393 LPTVFKWEGGGKQVFISGTFTDWKT-IPMVKSHGDFVTIM 509
+PTV +WE GG++V +SG+F DWKT IPM S+ +F I+
Sbjct: 69 IPTVIRWENGGRKVLLSGSFNDWKTRIPMNYSNNEFTAII 108
>SB_35358| Best HMM Match : 7tm_1 (HMM E-Value=0.016)
Length = 133
Score = 34.3 bits (75), Expect = 0.084
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -2
Query: 544 KIFVLMFTFW*IIIVTKSPCDFTMGIVFQSVNVPEINTCFPPPSHLKTVGNTLISSTILL 365
K+F+++ + W VT SP F + + N +P P H + L S T L+
Sbjct: 21 KVFIMLVSAWLAAFVTGSPEIFAFQLAQNTTEHLPCNEYWPQPIHRQIYTMVLFSCTYLV 80
Query: 364 PSVRVF 347
P + +F
Sbjct: 81 PLLIIF 86
>SB_48507| Best HMM Match : TolA (HMM E-Value=1)
Length = 649
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 291 YTKAVPESDIEYTEQRERSNTLTDGSKIVD 380
Y K V E DI+ + +RS+ DG KIVD
Sbjct: 292 YQKEVAEDDIDDMKAEKRSDVEEDGKKIVD 321
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 252 SDDDNNIEDGAPYYTKAVPESDIEYTEQRERSNT 353
+DD N+E AP +KAV ESD T Q E +T
Sbjct: 142 NDDGENLELEAPK-SKAVKESDDRNTNQIEEDST 174
>SB_48457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 234 RR*SK*SDDDNNIEDGAPYYTKAVPESDIEY 326
RR S+ S D+N D AP Y +A+ +S EY
Sbjct: 19 RRLSEISCDENTFNDAAPQYQEALRKSGYEY 49
>SB_29837| Best HMM Match : MobC (HMM E-Value=6.8)
Length = 327
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 234 RR*SK*SDDDNNIEDGAPYYTKAVPESDIEY 326
RR S+ S D+N D AP Y +A+ +S EY
Sbjct: 230 RRLSEISCDENTFNDAAPQYQEALRKSGYEY 260
>SB_9586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 234 RR*SK*SDDDNNIEDGAPYYTKAVPESDIEYTEQRERSNT 353
+R S S D + AP Y KA ES YT E +NT
Sbjct: 1024 KRLSTLSSDKETFDQAAPPYQKAPDESGYNYTLHYEPNNT 1063
>SB_37265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 277
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 234 RR*SK*SDDDNNIEDGAPYYTKAVPESDIEYTEQRERSNTLTD 362
RR S S D + + AP Y KA+ +S YT R NT+T+
Sbjct: 95 RRLSALSSDQASFDQTAPPYQKAIDDSGYNYT-LRYEPNTVTN 136
>SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 922
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 234 RR*SK*SDDDNNIEDGAPYYTKAVPESDIEYTEQRERSNTLTD 362
RR S S D + + AP Y KA+ +S YT R NT+T+
Sbjct: 711 RRLSALSSDQASFDQTAPPYQKAIDDSGYNYT-LRYEPNTVTN 752
>SB_38940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 401 SFQMGRRWKTSIYFWNIYRLENYSHGKITW*F---CYNNDLPEGEHQ 532
SF+ RW ++ FWN+ + E K+T F YN D E E +
Sbjct: 27 SFKSSSRWLGALVFWNVEQSEMQKIRKLTARFEEGRYNRDTIEDESE 73
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 279 GAPYYTKAVPESDIEYTEQRERSNTLTDGSKI 374
G PYYT+ V E +EY+ ++ + DG+ +
Sbjct: 697 GRPYYTQGVTEYTVEYSLTGDQWQSYQDGNGV 728
>SB_6428| Best HMM Match : DUF652 (HMM E-Value=8.7)
Length = 98
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 530 QYKYFVDGEWRHDPTVKVIDNGMGSKN 610
QY+Y+ G++ HD TV +D G + N
Sbjct: 49 QYQYWDKGKYAHDVTVPTLDKGKYALN 75
>SB_57095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 255 DDDNNIEDGAPYYTKAVPESDIEYTEQRERSNT 353
++D + G P +A PE + E E+RE +T
Sbjct: 79 EEDPEVNGGEPGENEAEPEGETEEAEEREEEST 111
>SB_6098| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=1e-39)
Length = 463
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 303 VPESDIEYTEQRER-SNTLTDGSKIVDDIKVLPTVFKWEGGGKQVFISGTFTDWKTIPMV 479
VPE I + + + S+TLT+ D++ L G + F + DW ++ M
Sbjct: 68 VPEQSIVFLKTHKTGSSTLTNIFNRFADLRELKVALPLPGYNR--FKWPLYFDWSSVDMY 125
Query: 480 KSHGDFVTIM 509
+ +GD+ ++
Sbjct: 126 RLNGDYANVL 135
>SB_51988| Best HMM Match : bZIP_2 (HMM E-Value=7.3e-13)
Length = 244
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 261 DNNIEDG--APYYTKAVPESDIEYTEQRERSNTLTDGSKIVDD 383
DN+ DG P ++++P+S E+T R + ++ GS++ D
Sbjct: 41 DNSDFDGNLGPLLSESIPKSINEFTSSTSRGSPVSPGSQVSSD 83
>SB_43088| Best HMM Match : SDF (HMM E-Value=4.1e-08)
Length = 236
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -2
Query: 610 ILGPHSIVNYFHCRIMPPFSINKIFVLMFTFW*IIIVTKSPCDFTMGI 467
I+G S+V YF ++ I+ +FVL ++ ++ K+P F +G+
Sbjct: 4 IVGVLSMVGYFMLTVISSILIHGLFVLPLMYF--VMTRKNPYKFMLGM 49
>SB_24309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 303
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +2
Query: 401 SFQMGRRWKTSIYFWNIYRLEN----YSHGKITW*FCYNNDLPEGEHQYKYFVDGEWR 562
+F G RW+T + Y++EN +S + + + +P GEH + +WR
Sbjct: 195 TFSKGTRWRTQTDIYQRYQVENTVRHFSKVQRGEYIRHLSKVPSGEHSQTFSKGTKWR 252
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,698,872
Number of Sequences: 59808
Number of extensions: 424636
Number of successful extensions: 1130
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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