Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1226
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81550-1|CAB04480.1|  269|Caenorhabditis elegans Hypothetical pr...    42   5e-04
U41543-4|AAM69116.1|  575|Caenorhabditis elegans Hypothetical pr...    40   0.001
U41543-3|AAB37024.1|  572|Caenorhabditis elegans Hypothetical pr...    40   0.001
AL117202-12|CAB55074.1|  274|Caenorhabditis elegans Hypothetical...    35   0.042
U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class c...    29   2.8  
U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class c...    29   2.8  
U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class c...    29   2.8  
AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.      29   2.8  
U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF068708-2|AAC17753.1|  464|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>Z81550-1|CAB04480.1|  269|Caenorhabditis elegans Hypothetical
           protein F55F3.1 protein.
          Length = 269

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +3

Query: 378 DDIKVLPTVFKWEGGG---KQVFISGTFTDWKT-IPMVKSHGDFVTIM 509
           DD    P VFKW       +QV+I G++  W T IP+VKS  DF TI+
Sbjct: 52  DDKSKFPVVFKWNINNATPRQVYICGSWDGWNTKIPLVKSTSDFSTIV 99



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 509 DLPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNLVTV 625
           DL  G+H+YK+ VD +W  D   +   N +G +NN+V +
Sbjct: 100 DLEPGKHEYKFMVDSKWVVDDNQQKTGNNLGGENNVVMI 138


>U41543-4|AAM69116.1|  575|Caenorhabditis elegans Hypothetical
           protein F46H5.7b protein.
          Length = 575

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +2

Query: 509 DLPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNLVTVK 628
           +L  G H++++ ++GEW      + + NG+G +NN++ V+
Sbjct: 536 NLTRGRHEFRFMINGEWATSSDYQQVPNGLGGQNNIIFVE 575


>U41543-3|AAB37024.1|  572|Caenorhabditis elegans Hypothetical
           protein F46H5.7a protein.
          Length = 572

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +2

Query: 509 DLPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNLVTVK 628
           +L  G H++++ ++GEW      + + NG+G +NN++ V+
Sbjct: 533 NLTRGRHEFRFMINGEWATSSDYQQVPNGLGGQNNIIFVE 572


>AL117202-12|CAB55074.1|  274|Caenorhabditis elegans Hypothetical
           protein Y47D3A.15 protein.
          Length = 274

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 509 DLPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNLVTVKMS 634
           DL  G+++YK+ VDG W  D       +  G++NN++ ++ S
Sbjct: 105 DLQPGQYEYKFQVDGSWVVDDNQGKAQDVHGNENNMINIQDS 146



 Score = 34.7 bits (76), Expect = 0.056
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = +3

Query: 396 PTVFKWE----GGGKQVFISGTFTDWKT-IPMVKSHGDFVTIMIYQ 518
           P VF+W        + V I G++ +W+T IPMVKS  DF TI+  Q
Sbjct: 62  PVVFRWSFTQNAQPRVVHIVGSWDNWQTRIPMVKSTNDFSTIIDLQ 107


>U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform c protein.
          Length = 667

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 80  LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMI 244
           L TY  L  K G         G  +LTN+ + +K++ L+ ++G P   I+  +++
Sbjct: 325 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLL 378


>U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform b protein.
          Length = 700

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 80  LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMI 244
           L TY  L  K G         G  +LTN+ + +K++ L+ ++G P   I+  +++
Sbjct: 358 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLL 411


>U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform a protein.
          Length = 577

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 80  LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMI 244
           L TY  L  K G         G  +LTN+ + +K++ L+ ++G P   I+  +++
Sbjct: 235 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLL 288


>AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.
          Length = 577

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 80  LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMI 244
           L TY  L  K G         G  +LTN+ + +K++ L+ ++G P   I+  +++
Sbjct: 235 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLL 288


>U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical
           protein M02F4.1 protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 228 KARR*SK*SDDDNNIEDGAPYYTKAVPESDIEYTEQRERSNTL 356
           KA R S+ +DDD+N++DG  +  +  P  D +  + R +   L
Sbjct: 238 KANRRSR-TDDDDNLDDGDNFKPRRKPLQDTQEEDNRPKREVL 279


>AF068708-2|AAC17753.1|  464|Caenorhabditis elegans Hypothetical
           protein C18G1.6 protein.
          Length = 464

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 457 SVNVPEINTCFPPPSHLKTVGNTLISSTILLPSVRVFDLSRC 332
           ++N  +IN+ FP    +K   N  +      P +R+F LSRC
Sbjct: 44  TINTDQINSSFP----IKFYHNAYVDYRYETPRLRIFALSRC 81


>Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical
           protein ZK455.1 protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 318 IEYTEQRERSNTLTDGSKIVDDIKVLP 398
           IE+   RER N L  GSK  D++ ++P
Sbjct: 143 IEFERNRERFNFLKWGSKAFDNLLIVP 169


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 458  ICKCSRNKYLFSTSFPFENCW*YFNIVD 375
            IC    NKYL    F F+N   +FN+ D
Sbjct: 5363 ICSTGNNKYLLKNPFGFDNK--FFNLTD 5388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,993,402
Number of Sequences: 27780
Number of extensions: 336528
Number of successful extensions: 1008
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)