Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1226
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09020.1 68414.m01006 protein kinase, putative similar to pro...    42   3e-04
At3g52180.1 68416.m05729 protein tyrosine phosphatase/kinase int...    41   8e-04
At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1 ...    40   0.001
At4g16360.1 68417.m02478 5'-AMP-activated protein kinase beta-2 ...    39   0.002
At1g27070.1 68414.m03300 5'-AMP-activated protein kinase-related...    36   0.017
At4g15050.1 68417.m02311 expressed protein  contains Pfam profil...    33   0.16 
At5g21170.1 68418.m02530 5'-AMP-activated protein kinase beta-2 ...    31   0.85 
At5g39790.1 68418.m04820 5'-AMP-activated protein kinase beta-1 ...    30   1.1  
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ...    28   4.5  
At3g25010.1 68416.m03126 disease resistance family protein conta...    28   4.5  
At1g10190.1 68414.m01149 expressed protein similar to hypothetic...    28   6.0  

>At1g09020.1 68414.m01006 protein kinase, putative similar to
           protein kinase AKINbetagamma-2 [Zea mays] GI:11139548,
           AKINbetagamma-1 [Zea mays] GI:11139546; contains Pfam
           profile PF00571: CBS domain
          Length = 487

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +2

Query: 509 DLPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNL 616
           +L  G HQYK+FVDGEWRHD     +    G  N +
Sbjct: 64  NLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTI 99



 Score = 37.1 bits (82), Expect = 0.010
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 396 PTVFKWEGGGKQVFISGTFTDW-KTIPMVKSHG 491
           PT F W  GG++VF+SG+FT W + +PM    G
Sbjct: 22  PTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEG 54


>At3g52180.1 68416.m05729 protein tyrosine phosphatase/kinase
           interaction sequence protein (PTPKIS1) identical to
           PTPKIS1 protein [Arabidopsis thaliana] GI:11595504;
           contains Pfam profile PF00782: Dual specificity
           phosphatase, catalytic domain
          Length = 379

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 509 DLPEGEHQYKYFVDGEWRHDPTVKVI-DNGMGSKNNLVTV 625
           +LPEG+ +YKY +DGEW H+     I  N  G  NN   V
Sbjct: 298 ELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKV 337


>At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1
           subunit-related contains similarity to Swiss-Prot:P80387
           5'-AMP-activated protein kinase, beta-1 subunit (AMPK
           beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
          Length = 591

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 512 LPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNLVTV 625
           L +G++ YKY ++G+WRH  T     +  G+ NN++ V
Sbjct: 499 LTQGKYYYKYIINGDWRHSATSPTERDDRGNTNNIIVV 536


>At4g16360.1 68417.m02478 5'-AMP-activated protein kinase beta-2
           subunit, putative similar to Swiss-Prot:Q9QZH4
           5'-AMP-activated protein kinase, beta-2 subunit (AMPK
           beta-2 chain) [Rattus norvegicus]
          Length = 259

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 13/39 (33%), Positives = 26/39 (66%)
 Frame = +2

Query: 512 LPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNLVTVK 628
           LP G ++Y++ VDG+WRH P + +  +  G+  N++ ++
Sbjct: 113 LPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDLQ 151



 Score = 36.7 bits (81), Expect = 0.013
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 393 LPTVFKWEGGGKQVFISGTFTDWKTIPMVKSHGDFVTIM 509
           +PT+  W  GGK++ + G++ +WKT   ++  G   TIM
Sbjct: 72  IPTMITWCHGGKEIAVEGSWDNWKTRSRLQRSGKDFTIM 110


>At1g27070.1 68414.m03300 5'-AMP-activated protein kinase-related
           contains weak similarity to Swiss-Prot:Q9QZH4
           5'-AMP-activated protein kinase, beta-2 subunit (AMPK
           beta-2 chain) [Rattus norvegicus]
          Length = 532

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = +2

Query: 494 FCYNNDLPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNLVTV 625
           F  +  L  G+++ K+ VDG+W+ DP   ++ +G G +NNL+ +
Sbjct: 489 FSLSLKLYPGKYEIKFIVDGQWKVDPLRPIVTSG-GYENNLLII 531


>At4g15050.1 68417.m02311 expressed protein  contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 396

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 434 IYFWNIYRLENYSHGKITW*F-CYNNDLPEGEHQYKYFVDGEWRHDPTVKVI 586
           I FW   R    S   + W    Y+  LP  +  + YFVDG+ R+D  +K I
Sbjct: 293 IGFWPSSRFHQSSGNLVEWGGEVYSASLPSPQMGFGYFVDGQMRYDAYIKRI 344


>At5g21170.1 68418.m02530 5'-AMP-activated protein kinase beta-2
           subunit, putative similar to Swiss-Prot:Q9QZH4
           5'-AMP-activated protein kinase, beta-2 subunit (AMPK
           beta-2 chain) [Rattus norvegicus]
          Length = 283

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 393 LPTVFKWEGGGKQVFISGTFTDWKTIPMVKSHG 491
           +PT+  W  GG  V + G++ +W++   ++  G
Sbjct: 100 IPTIITWNQGGNDVAVEGSWDNWRSRKKLQKSG 132



 Score = 30.7 bits (66), Expect = 0.85
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 512 LPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNLVTV 625
           LP G + YK  VDGE ++ P +  + + +G+  N++ V
Sbjct: 141 LPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDV 178


>At5g39790.1 68418.m04820 5'-AMP-activated protein kinase beta-1
           subunit-related contains similarity to Swiss-Prot:P80387
           5'-AMP-activated protein kinase, beta-1 subunit (AMPK
           beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
          Length = 273

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 512 LPEGEHQYKYFVDGEWRHDPTVKVIDNGMGSKNNLV 619
           L  G ++ K+ VDGEW+  P       G+   N LV
Sbjct: 236 LRPGRYEMKFLVDGEWQISPEFPTSGEGLMENNVLV 271


>At5g58040.1 68418.m07263 fip1 motif-containing protein contains
           Pfam profile PF05182: Fip1 motif
          Length = 1192

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 121 GSNQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFDKKLDDDRS 249
           G N P E     NK PD +    SPA++       KK DD+ S
Sbjct: 501 GENVPVETSYVNNKRPDTESAEHSPAQDEPHKNLLKKQDDEIS 543


>At3g25010.1 68416.m03126 disease resistance family protein contains
           leucine rich-repeat (LRR) domains (23 copies)
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 881

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
 Frame = +3

Query: 252 SDDDNNIEDGAPYYTKAVPESDIEYTEQRERSNTLT---DGSKIVDDIKVLPTV-FKWEG 419
           S D N IED  P+Y K +P+  +      +    L+    GS    ++++L     K  G
Sbjct: 583 SVDHNGIEDTFPFYLKVLPKLQVLLLSSNKFYGPLSPPNQGSLGFPELRILEIAGNKLTG 642

Query: 420 GGKQVFISGTFTDWKTIPMVKSHGDFVTIMIYQKV 524
              Q F    F +WK   +  +  D    M+Y KV
Sbjct: 643 SLPQDF----FVNWKASSLTMNE-DQGLYMVYSKV 672


>At1g10190.1 68414.m01149 expressed protein similar to hypothetical
           protein GB:CAB10284 contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 396

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +2

Query: 440 FWNIYRLENYSHGKITW*F-CYNNDLPEGEHQYKYFVDGEWRHDPTVKVI 586
           FW   R    S   + W    Y+   P  +  Y YF+D   R+D  +K I
Sbjct: 295 FWPSSRFHQSSGNLVEWGGEAYSASQPSPQMGYGYFLDASMRYDAYIKRI 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,946,541
Number of Sequences: 28952
Number of extensions: 305792
Number of successful extensions: 803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)