Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1225X
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47...    29   3.1  
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999...    27   9.4  
12_02_0438 + 19093346-19093522,19094234-19094863                       27   9.4  

>03_01_0057 +
           476172-476283,476337-476449,476532-476634,477089-477210,
           477303-477497,477627-477701,478082-478179,478328-478421
          Length = 303

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 451 LFFYTVDRAVNYTKRSKSKNLKSAHSKQILV*QRRFEENVW 329
           LFF     +V + KR K  ++   H + +++  R F   VW
Sbjct: 259 LFFELFTASVCFGKRIKHSSISEGHDENLVIDNREFPFKVW 299


>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
            23300052-23300415,23300493-23300574,23300793-23300873,
            23300974-23302106,23302202-23302350,23302426-23302516,
            23303628-23305940
          Length = 1446

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 418  YTKRSKSKNLKSAHSKQILV*QRRFEEN-VWEIKVVENSCGA 296
            Y  +  SK L+  + +QIL  ++  EEN + + ++VE S GA
Sbjct: 1060 YVPKPLSKELQQQNLRQILPSEKSCEENKIRDKEIVERSTGA 1101


>12_02_0438 + 19093346-19093522,19094234-19094863
          Length = 268

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 134 IKVVDIAL*LSPPNFRHRSKIKSYVVQVLQFK 229
           + +VD+ + L  PN  H   ++ Y+  +L+FK
Sbjct: 42  LSIVDLVVVLLDPNVEHLRFLEGYINSLLEFK 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,276,188
Number of Sequences: 37544
Number of extensions: 216375
Number of successful extensions: 306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)