Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1225X
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.77 
SB_19565| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_46949| Best HMM Match : DUF77 (HMM E-Value=5.5)                     28   5.4  
SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -2

Query: 457 ITLFFYT-VDRAVNYTKRSKSKNLKSAHSKQILV*QRRFE 341
           + +F  T V++A NYT+   +K L +AH K+ +  +++F+
Sbjct: 4   LEIFMQTLVEKACNYTQARNAKTLSTAHLKRCITSEQQFD 43


>SB_19565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 199 LNFRPVSEVWWRQSQSDVYDFNHTKLQVSRDLDF 98
           L+F P  ++WW  + S + + N  K    RD+D+
Sbjct: 362 LDFNPAPDIWW--NGSALVEINRKKYITIRDIDY 393


>SB_46949| Best HMM Match : DUF77 (HMM E-Value=5.5)
          Length = 160

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 187 PVSEVWWRQSQSDVYDFNHTKL 122
           PV   WW + ++D  DFN T++
Sbjct: 54  PVGNEWWEKRKNDDKDFNSTRV 75


>SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -3

Query: 189 DLCLKFGGDNHKAMSTTL 136
           D CL  GGDNHKA   TL
Sbjct: 62  DHCLACGGDNHKARFCTL 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,864,438
Number of Sequences: 59808
Number of extensions: 269043
Number of successful extensions: 445
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)