Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1225X
         (530 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011349-1|AAR96141.1| 1961|Drosophila melanogaster RH02355p pro...    31   0.74 
AY069808-1|AAL39953.1| 1121|Drosophila melanogaster SD04942p pro...    31   0.74 
AE014297-4447|AAF56945.4| 1961|Drosophila melanogaster CG31037-P...    31   0.74 

>BT011349-1|AAR96141.1| 1961|Drosophila melanogaster RH02355p
           protein.
          Length = 1961

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -3

Query: 270 PS*LFLREATTRFTLNCRT-CTT*DLIFDLCLKFGGD---NHKAMSTTLITLN 124
           P  LFL  A       CR  C T DL F+ C++F GD     K ++  L+T N
Sbjct: 754 PFELFLDAALQNEFNQCRDFCNTFDLSFEQCIEFAGDYLLRRKKITQALLTYN 806


>AY069808-1|AAL39953.1| 1121|Drosophila melanogaster SD04942p
           protein.
          Length = 1121

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -3

Query: 270 PS*LFLREATTRFTLNCRT-CTT*DLIFDLCLKFGGD---NHKAMSTTLITLN 124
           P  LFL  A       CR  C T DL F+ C++F GD     K ++  L+T N
Sbjct: 600 PFELFLDAALQNEFNQCRDFCNTFDLSFEQCIEFAGDYLLRRKKITQALLTYN 652


>AE014297-4447|AAF56945.4| 1961|Drosophila melanogaster CG31037-PA
           protein.
          Length = 1961

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -3

Query: 270 PS*LFLREATTRFTLNCRT-CTT*DLIFDLCLKFGGD---NHKAMSTTLITLN 124
           P  LFL  A       CR  C T DL F+ C++F GD     K ++  L+T N
Sbjct: 754 PFELFLDAALQNEFNQCRDFCNTFDLSFEQCIEFAGDYLLRRKKITQALLTYN 806


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,212,610
Number of Sequences: 53049
Number of extensions: 387388
Number of successful extensions: 658
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1991467008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)