Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1225X
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92822-5|CAD45612.3|  743|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z92822-4|CAD18893.2|  791|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z92822-3|CAB07302.3|  774|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z92822-2|CAB70188.2|  850|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U58084-1|AAC47121.1|  743|Caenorhabditis elegans CUL-2 protein.        29   2.7  
U10401-4|AAN65289.1|  937|Caenorhabditis elegans Myc and mondo-l...    27   6.3  
U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-l...    27   6.3  
AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interacto...    27   6.3  
AF213473-1|AAL50027.1|  913|Caenorhabditis elegans basic helix-l...    27   6.3  

>Z92822-5|CAD45612.3|  743|Caenorhabditis elegans Hypothetical
           protein ZK520.4d protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 199 LNFRPVSEVWWRQSQSDVYD 140
           +N RP++ V W    SDVYD
Sbjct: 26  INLRPITNVQWHHKFSDVYD 45


>Z92822-4|CAD18893.2|  791|Caenorhabditis elegans Hypothetical
           protein ZK520.4c protein.
          Length = 791

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 199 LNFRPVSEVWWRQSQSDVYD 140
           +N RP++ V W    SDVYD
Sbjct: 43  INLRPITNVQWHHKFSDVYD 62


>Z92822-3|CAB07302.3|  774|Caenorhabditis elegans Hypothetical
           protein ZK520.4b protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 199 LNFRPVSEVWWRQSQSDVYD 140
           +N RP++ V W    SDVYD
Sbjct: 26  INLRPITNVQWHHKFSDVYD 45


>Z92822-2|CAB70188.2|  850|Caenorhabditis elegans Hypothetical
           protein ZK520.4a protein.
          Length = 850

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 199 LNFRPVSEVWWRQSQSDVYD 140
           +N RP++ V W    SDVYD
Sbjct: 102 INLRPITNVQWHHKFSDVYD 121


>U58084-1|AAC47121.1|  743|Caenorhabditis elegans CUL-2 protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 199 LNFRPVSEVWWRQSQSDVYD 140
           +N RP++ V W    SDVYD
Sbjct: 26  INLRPITNVQWHHKFSDVYD 45


>U10401-4|AAN65289.1|  937|Caenorhabditis elegans Myc and mondo-like
           protein 1, isoformb protein.
          Length = 937

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 243 LLPGEIARMVERKLGRHYAP 302
           LL G++A  VE K GRHY P
Sbjct: 744 LLNGKMAVKVEEKSGRHYLP 763


>U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-like
           protein 1, isoforma protein.
          Length = 1009

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 243 LLPGEIARMVERKLGRHYAP 302
           LL G++A  VE K GRHY P
Sbjct: 744 LLNGKMAVKVEEKSGRHYLP 763


>AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interactor
           protein.
          Length = 1009

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 243 LLPGEIARMVERKLGRHYAP 302
           LL G++A  VE K GRHY P
Sbjct: 744 LLNGKMAVKVEEKSGRHYLP 763


>AF213473-1|AAL50027.1|  913|Caenorhabditis elegans basic
           helix-loop-helix leucinezipper WBSCR14-like protein
           protein.
          Length = 913

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 243 LLPGEIARMVERKLGRHYAP 302
           LL G++A  VE K GRHY P
Sbjct: 648 LLNGKMAVKVEEKSGRHYLP 667


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,377,016
Number of Sequences: 27780
Number of extensions: 213143
Number of successful extensions: 367
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)