Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1225X
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   4.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   5.9  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   7.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.9  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 184 VSEVWWRQSQSDVYDFNHTKLQVSRDLD 101
           + + W+ +  SD+ + NH   +   DLD
Sbjct: 169 IKDPWFPRHASDLDNCNHLMTKFEPDLD 196


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 265 LAISPGSNNAFYFKL*NLHYIRLNFRP 185
           +A+SP +NN +Y  L +     +N +P
Sbjct: 257 MALSPMTNNLYYSPLSSRSLYYVNTKP 283


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 198 LIFDLCLKFGGDNHKAMSTTLITL 127
           +IF +C+  G   H+ + T + TL
Sbjct: 6   IIFAICVCVGAMTHEELKTGIQTL 29


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 307 NFQQLLFPKH 336
           NFQQLLF K+
Sbjct: 366 NFQQLLFSKY 375


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 265 LAISPGSNNAFYFKL*NLHYIRLNFRP 185
           +A+SP +NN +Y  L +     +N  P
Sbjct: 257 MALSPVTNNLYYSPLTSHSLYYVNMEP 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,506
Number of Sequences: 438
Number of extensions: 2635
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)