Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1224
         (800 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IAT7 Cluster: Abc transporter, putative; n=7; Plasmod...    35   2.7  

>UniRef50_Q8IAT7 Cluster: Abc transporter, putative; n=7;
           Plasmodium|Rep: Abc transporter, putative - Plasmodium
           falciparum (isolate 3D7)
          Length = 940

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
 Frame = +2

Query: 386 FEIFTF*PFRI-----VHSSIYRIKKKCYVSMCSFNIYL*VSFDIKFTILYENVFTR*LQ 550
           F+ F + PF       VH +I   KKK  V +    +Y  +  DIK  +L+ N +T  L 
Sbjct: 612 FDYFNYEPFASASIGQVHDAIINKKKKVAVKIQYPGVYESIDSDIK-NLLFINQYTN-LI 669

Query: 551 IEFLHIADFALTATK*YLKT*VDEGDMIQFVNFEKTGKKNSCYLYFIFVYNSFITCNFLK 730
           ++ L+I +      K  LK   D  +  ++    K   KNS Y Y   +Y  +IT + L 
Sbjct: 670 LKNLYIENLCNVIQK-ELKCECDYINEAKYYALFKNIFKNSKYFYVPSIYPEYITKHVLV 728

Query: 731 IAF 739
            ++
Sbjct: 729 TSY 731


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,719,436
Number of Sequences: 1657284
Number of extensions: 13379562
Number of successful extensions: 25731
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 24958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25729
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68731504465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)