Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1224
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_7984| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_35800| Best HMM Match : 7tm_1 (HMM E-Value=3e-05)                   29   3.3  
SB_21363| Best HMM Match : Taeniidae_ag (HMM E-Value=0.52)             28   7.7  
SB_19565| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -2

Query: 457 ITLFFYT-VDRAVNYTKRSKSKNLKSAHSKQILV*QRRFE 341
           + +F  T V++A NYT+   +K L +AH K+ +  +++F+
Sbjct: 4   LEIFMQTLVEKACNYTQARNAKTLSTAHLKRCITSEQQFD 43


>SB_7984| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 449 KCYVSMCSFNIYL*VSFDIKFTILYENVFTR*LQIEFL 562
           KC++  CS+NI + V + ++ T ++ NV      IEF+
Sbjct: 24  KCFILGCSWNITVPVGYRVRLTFVHVNVTCAYGGIEFI 61


>SB_35800| Best HMM Match : 7tm_1 (HMM E-Value=3e-05)
          Length = 301

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 651 SKLTNCIISPSSTHVFKYHFVAVKAKSAMC 562
           +KLTN  ++ SS H   YH+ A +   A C
Sbjct: 256 AKLTNSPLTDSSRHCLHYHYAATECFPACC 285


>SB_21363| Best HMM Match : Taeniidae_ag (HMM E-Value=0.52)
          Length = 328

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -3

Query: 744 GLKAIFRKLHVMKELYTKI-KYK*HEFFLPVFSKLTN 637
           G+K    K+H++K++Y ++ K+K +EF   + +K+ N
Sbjct: 101 GMKIYRYKMHILKDMYNEMKKHKLYEFAERIKAKIKN 137


>SB_19565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 199 LNFRPVSEVWWRQSQSDVYDFNHTKLQVSRDLDF 98
           L+F P  ++WW  + S + + N  K    RD+D+
Sbjct: 362 LDFNPAPDIWW--NGSALVEINRKKYITIRDIDY 393


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,931,596
Number of Sequences: 59808
Number of extensions: 435198
Number of successful extensions: 745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)