Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1224
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70268-2|CAA94218.1|   98|Caenorhabditis elegans Hypothetical pr...    31   0.73 
Z92822-5|CAD45612.3|  743|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z92822-4|CAD18893.2|  791|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z92822-3|CAB07302.3|  774|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z92822-2|CAB70188.2|  850|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U58084-1|AAC47121.1|  743|Caenorhabditis elegans CUL-2 protein.        29   5.1  
AL132859-3|CAB60491.1|  346|Caenorhabditis elegans Hypothetical ...    29   5.1  

>Z70268-2|CAA94218.1|   98|Caenorhabditis elegans Hypothetical
           protein T21E8.5 protein.
          Length = 98

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 726 RKLHVMK-ELYTKIKYK*HEFFLPVFSKLTNCIISPSSTHVFKYHFVAVKAKSAMC 562
           RK+H++  E + K + +     L V       +I+  S HVFK HF A++ K A C
Sbjct: 15  RKIHIINAEQFLKTRNEHTTLILQV-----EAMITEFSLHVFKEHFEAIRRKGAYC 65


>Z92822-5|CAD45612.3|  743|Caenorhabditis elegans Hypothetical
           protein ZK520.4d protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 199 LNFRPVSEVWWRQSQSDVYD 140
           +N RP++ V W    SDVYD
Sbjct: 26  INLRPITNVQWHHKFSDVYD 45


>Z92822-4|CAD18893.2|  791|Caenorhabditis elegans Hypothetical
           protein ZK520.4c protein.
          Length = 791

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 199 LNFRPVSEVWWRQSQSDVYD 140
           +N RP++ V W    SDVYD
Sbjct: 43  INLRPITNVQWHHKFSDVYD 62


>Z92822-3|CAB07302.3|  774|Caenorhabditis elegans Hypothetical
           protein ZK520.4b protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 199 LNFRPVSEVWWRQSQSDVYD 140
           +N RP++ V W    SDVYD
Sbjct: 26  INLRPITNVQWHHKFSDVYD 45


>Z92822-2|CAB70188.2|  850|Caenorhabditis elegans Hypothetical
           protein ZK520.4a protein.
          Length = 850

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 199 LNFRPVSEVWWRQSQSDVYD 140
           +N RP++ V W    SDVYD
Sbjct: 102 INLRPITNVQWHHKFSDVYD 121


>Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical
           protein F15H10.7 protein.
          Length = 666

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 615 THVFKYHFVAVKAKSAMCKNSICNQRVKTF 526
           + +FKYH+  +  KS+  KN +  Q    F
Sbjct: 165 SEIFKYHYTQIVPKSSNIKNKVIEQSTSDF 194


>U58084-1|AAC47121.1|  743|Caenorhabditis elegans CUL-2 protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 199 LNFRPVSEVWWRQSQSDVYD 140
           +N RP++ V W    SDVYD
Sbjct: 26  INLRPITNVQWHHKFSDVYD 45


>AL132859-3|CAB60491.1|  346|Caenorhabditis elegans Hypothetical
           protein Y39C12A.6 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 650 EKTGKKNSCYLYFIFVYNSFITCNFLKIAF 739
           E+   KN CY+YF+ V+   I  N   + +
Sbjct: 9   ERAFNKNGCYVYFLIVFLIIIILNIFSLMY 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,619,170
Number of Sequences: 27780
Number of extensions: 353578
Number of successful extensions: 686
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)