Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1224
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR...    29   2.7  
At4g02630.1 68417.m00357 protein kinase family protein contains ...    28   8.3  

>At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1194

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -2

Query: 673  RVFFARFLKINKLYHIPFIHSCLQISFRGCQSKICYVQK 557
            R++F +  K+N+      +H+C+   F G Q   C++ +
Sbjct: 1013 RLYFPKCFKLNQEARDLIMHTCIDAMFPGTQVPACFIHR 1051


>At4g02630.1 68417.m00357 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 492

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/84 (27%), Positives = 37/84 (44%)
 Frame = +2

Query: 128 SVIKVVDIAL*LSPPNFRHRSKIKSYVVQVLQFKVKRVVASRRNS*DGGAEIGQTLRPTR 307
           S+ + + +AL    PN + R K+  +++ +L+ +       RRNS  GG  I Q   P R
Sbjct: 405 SLKRTLLVALRCVDPNAQKRPKM-GHIIHMLEAEDLVSKDDRRNSGGGGGGIEQGRSPRR 463

Query: 308 XXXXXXXXXXXXKSSLSNQNLLAM 379
                        S L N + LA+
Sbjct: 464 KTNVNESEDESGNSVLINNDQLAL 487


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,980,582
Number of Sequences: 28952
Number of extensions: 304421
Number of successful extensions: 519
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)