BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1223 (712 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 27 2.0 SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 27 2.6 SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 3.5 SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 8.1 SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 25 8.1 >SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosaccharomyces pombe|chr 2|||Manual Length = 593 Score = 27.5 bits (58), Expect = 2.0 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +2 Query: 368 YDSARSSPARVCHATVTYFNVNDSEDSSSVRTEYTLLDDADRDLE 502 +D S+ A H+T T + + S + R E+T DD D DLE Sbjct: 547 FDPTHSADASTTHSTATGLSRSGSLKNIKFRYEFTESDDED-DLE 590 >SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 391 Score = 27.1 bits (57), Expect = 2.6 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = +2 Query: 344 NESRTDSAYDSARSSPARVCHATVTYFNVNDSEDSSSVRTEYTLLDDADRDLEQD 508 +E T S S S P + T+ N + S+ S R + DDAD D EQD Sbjct: 213 DELSTTSPESSKVSEPIIQDNTQTTHINNDSSDIRFSSRCDL-FADDADSDWEQD 266 >SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 743 Score = 26.6 bits (56), Expect = 3.5 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Frame = +3 Query: 165 PSLVRSPSYNGTV-DARSEIDVHK 233 PS VRS SYN T +++SEI H+ Sbjct: 617 PSSVRSSSYNSTASESKSEITSHQ 640 >SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 2|||Manual Length = 3699 Score = 25.4 bits (53), Expect = 8.1 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = -3 Query: 647 LV*LFQ*LAITEVDATPHKVSKDIRPHVVHNVLTSSRLS 531 L+ LF+ LA V+ P K ++ +RPH+ + + TS L+ Sbjct: 721 LLRLFK-LAFMTVNVFPEKNAEVLRPHISYIISTSLELT 758 >SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosaccharomyces pombe|chr 2|||Manual Length = 550 Score = 25.4 bits (53), Expect = 8.1 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 4/46 (8%) Frame = +2 Query: 398 VCHATV-TYFNVNDSEDSSSVRTEYTLLDDADRDLE---QDRVRKI 523 +C AT ++ DS ++ R Y +LD+ADR L+ + ++RKI Sbjct: 248 ICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKI 293 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,188,070 Number of Sequences: 5004 Number of extensions: 33333 Number of successful extensions: 129 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 129 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 331187010 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -