Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1223
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    27   2.0  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    27   2.6  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   3.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.1  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    25   8.1  

>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 368 YDSARSSPARVCHATVTYFNVNDSEDSSSVRTEYTLLDDADRDLE 502
           +D   S+ A   H+T T  + + S  +   R E+T  DD D DLE
Sbjct: 547 FDPTHSADASTTHSTATGLSRSGSLKNIKFRYEFTESDDED-DLE 590


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +2

Query: 344 NESRTDSAYDSARSSPARVCHATVTYFNVNDSEDSSSVRTEYTLLDDADRDLEQD 508
           +E  T S   S  S P    +   T+ N + S+   S R +    DDAD D EQD
Sbjct: 213 DELSTTSPESSKVSEPIIQDNTQTTHINNDSSDIRFSSRCDL-FADDADSDWEQD 266


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 165 PSLVRSPSYNGTV-DARSEIDVHK 233
           PS VRS SYN T  +++SEI  H+
Sbjct: 617 PSSVRSSSYNSTASESKSEITSHQ 640


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -3

Query: 647 LV*LFQ*LAITEVDATPHKVSKDIRPHVVHNVLTSSRLS 531
           L+ LF+ LA   V+  P K ++ +RPH+ + + TS  L+
Sbjct: 721 LLRLFK-LAFMTVNVFPEKNAEVLRPHISYIISTSLELT 758


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +2

Query: 398 VCHATV-TYFNVNDSEDSSSVRTEYTLLDDADRDLE---QDRVRKI 523
           +C AT     ++ DS  ++  R  Y +LD+ADR L+   + ++RKI
Sbjct: 248 ICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKI 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,070
Number of Sequences: 5004
Number of extensions: 33333
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)