Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1223
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0032 - 6227556-6227926,6228322-6231085                           31   1.2  
02_02_0030 - 6207784-6208154,6208286-6211310                           31   1.2  
02_02_0034 - 6246183-6246553,6246672-6249699                           30   1.6  
02_01_0061 + 442288-442411,442445-445498,445630-446000                 29   2.8  
04_04_1373 + 33025059-33025422,33025510-33025551,33025836-330260...    28   6.4  

>02_02_0032 - 6227556-6227926,6228322-6231085
          Length = 1044

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 605  ATPHKVSKDIRPHVVHNVLTSSRLSLMIFCVL 510
            A PH+V++ + P+++HN L      LM  CVL
Sbjct: 969  ALPHRVTEVLDPNMLHNDLDGGNSELMQSCVL 1000


>02_02_0030 - 6207784-6208154,6208286-6211310
          Length = 1131

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 611  VDAT-PHKVSKDIRPHVVHNVLTSSRLSLMIFCVL 510
            VDA  PH+V++ + P+++HN L      LM  CVL
Sbjct: 1053 VDAAFPHRVTEILDPNMLHNDLDGGNSELMQSCVL 1087


>02_02_0034 - 6246183-6246553,6246672-6249699
          Length = 1132

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 605  ATPHKVSKDIRPHVVHNVLTSSRLSLMIFCVL 510
            A PH+V++ + P+++HN L      +M  CVL
Sbjct: 1057 AFPHRVTEILDPNMLHNDLDGGNFEMMQSCVL 1088


>02_01_0061 + 442288-442411,442445-445498,445630-446000
          Length = 1182

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 611  VDAT-PHKVSKDIRPHVVHNVLTSSRLSLMIFCVL 510
            VDA  PH+V++ + P+++HN L      LM  C+L
Sbjct: 1104 VDAAFPHRVTEILDPNMLHNDLDGGNSELMQSCLL 1138


>04_04_1373 +
           33025059-33025422,33025510-33025551,33025836-33026054,
           33026145-33026384,33026483-33027508,33027770-33028545
          Length = 888

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 7   SSERYPINTKLSNFSCAKWCLPTFFLKRED 96
           S E Y  N KL N S   WC P   + +ED
Sbjct: 817 SMESYVGNNKLYNTSQGSWCSPNGHVPKED 846


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,030,596
Number of Sequences: 37544
Number of extensions: 217223
Number of successful extensions: 672
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)