Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1223
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36546| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_29537| Best HMM Match : Ribosomal_L3 (HMM E-Value=0.61)             30   1.6  
SB_33215| Best HMM Match : HECT (HMM E-Value=0)                        30   2.1  
SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)              29   4.9  
SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)                      29   4.9  
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_18443| Best HMM Match : Phage_attach (HMM E-Value=5.3)              28   8.6  

>SB_36546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 341 TNESRTDSAYDSARSSPARVCHATVTYFNVNDSEDSSSVRTE-YTLLDDADRDLEQD 508
           T + R D        +P+ VC     YFN+N  ++   +    Y + DD D D E D
Sbjct: 11  TPDVRRDICLSLKLKTPSVVCTGFDRYFNINKIQNGEILELRLYDVSDDVDGDDEND 67


>SB_29537| Best HMM Match : Ribosomal_L3 (HMM E-Value=0.61)
          Length = 261

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 579 YPSARCS*CTDQLQAFVD 526
           Y  A+CS CTD+LQ +VD
Sbjct: 26  YSKAKCSRCTDELQTYVD 43


>SB_33215| Best HMM Match : HECT (HMM E-Value=0)
          Length = 1128

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 362 SAYDSARSSPARVCHATVTYFNVNDSEDSSSVRTEYTLLDDADRDLEQDRVRKIS 526
           S YDS   SP++       Y   +D +D         + DD+D D+E+    ++S
Sbjct: 382 SQYDSR--SPSQESTLRTAYSESDDDDDDDGTMIRRAMEDDSDLDIEETEASRVS 434


>SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)
          Length = 688

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 90  RRRWLKAFKLFKGNKHRKSSRNRVSPSLVRSPSYNGTVDARSEIDVHKF 236
           R  +++  ++++GNKH+      +    VRS  YNG + A    D  +F
Sbjct: 158 RIAFMRMGRVYRGNKHQLFFLTFIDTVKVRSAGYNGAIAALIYQDPEQF 206


>SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)
          Length = 289

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +2

Query: 341 TNESRTDSAYDSARSSPARVCHATVTYFNVNDSEDSSSVRTEYTLLDDADRDLEQDRVRK 520
           ++ SR   ++ S +    R C +      ++ S  SS   +  + + D+DR  E + V  
Sbjct: 106 SHRSRKSESHQSRKPDSHRSCISDSYRSEMSGSLTSSKSNSYRSGMSDSDRFKEDNNVYM 165

Query: 521 ISSTKAWSWSV 553
            +S KAW  S+
Sbjct: 166 NNSMKAWQRSL 176


>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 8/29 (27%), Positives = 22/29 (75%)
 Frame = +3

Query: 126 GNKHRKSSRNRVSPSLVRSPSYNGTVDAR 212
           GN H+ +S+ +V  +++++ + +GT+D++
Sbjct: 735 GNDHKTASKTKVQSTVIQTCNLDGTIDSK 763


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 404  HATVTYFNVNDSEDS-SSVRTEYTLLDDADRDLEQDRVRKISSTKAWSWSVHYEQ 565
            + T+ + N +D + + SS+ T     DD D           SST  W W +H  Q
Sbjct: 2461 YETILFLNYDDLDMADSSISTLSFQYDDMDMADSSISTFSTSSTMTWIWLIHPSQ 2515


>SB_18443| Best HMM Match : Phage_attach (HMM E-Value=5.3)
          Length = 194

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 431 NDSEDSSSVRTEYTLLDDADRDLEQDRV 514
           ND +D+ S  +EY+ LDD D D +   V
Sbjct: 135 NDEDDTDSEESEYSGLDDDDDDDDSSEV 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,296,103
Number of Sequences: 59808
Number of extensions: 249068
Number of successful extensions: 856
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)