Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1222X
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1373 + 33025059-33025422,33025510-33025551,33025836-330260...    28   3.3  
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           27   7.7  

>04_04_1373 +
           33025059-33025422,33025510-33025551,33025836-33026054,
           33026145-33026384,33026483-33027508,33027770-33028545
          Length = 888

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 7   SSERYPINTKLSNFSCAKWCLPTFFLKRED 96
           S E Y  N KL N S   WC P   + +ED
Sbjct: 817 SMESYVGNNKLYNTSQGSWCSPNGHVPKED 846


>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 3/21 (14%)
 Frame = -3

Query: 395 APDYSWPSHKLN---PFAIRL 342
           AP ++WPSHKL+   PF +R+
Sbjct: 151 APRHNWPSHKLSYSQPFELRV 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,446,988
Number of Sequences: 37544
Number of extensions: 141168
Number of successful extensions: 424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)