Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1222X
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)              29   2.6  
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.4  
SB_9782| Best HMM Match : FeoB_C (HMM E-Value=0.95)                    27   6.0  
SB_48168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)
          Length = 688

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 90  RRRWLKAFKLFKGNKHRKSSRNRVSPSLVRSPSYNGTVDARSEIDVHKF 236
           R  +++  ++++GNKH+      +    VRS  YNG + A    D  +F
Sbjct: 158 RIAFMRMGRVYRGNKHQLFFLTFIDTVKVRSAGYNGAIAALIYQDPEQF 206


>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 8/29 (27%), Positives = 22/29 (75%)
 Frame = +3

Query: 126 GNKHRKSSRNRVSPSLVRSPSYNGTVDAR 212
           GN H+ +S+ +V  +++++ + +GT+D++
Sbjct: 735 GNDHKTASKTKVQSTVIQTCNLDGTIDSK 763


>SB_9782| Best HMM Match : FeoB_C (HMM E-Value=0.95)
          Length = 164

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 117 LFKGNKHRKSSRNRVSPSLVRSPSYNGTVDARSEIDVHKFCGCRTSY 257
           L +G++ R   R R+ PS     S+N T +  SE+  H  C  R S+
Sbjct: 108 LLRGDRGRVI-RMRIRPSSHGGVSHNATGEINSEVRHHVSCPSRNSH 153


>SB_48168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 98  LVEGLQAIQRQQAPQELPQPRVSLSGSL 181
           L+ GL   + Q +   LP P+ SL GSL
Sbjct: 282 LIWGLSVFESQSSKNHLPHPKGSLFGSL 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,826,527
Number of Sequences: 59808
Number of extensions: 157011
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)