Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1222X
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006689-1|AAF39971.2|  257|Caenorhabditis elegans Hypothetical ...    27   5.2  
Z81462-2|CAB03841.1|  263|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U00054-1|AAA50716.1|   91|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF067940-3|AAC19207.1|  272|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AC006689-1|AAF39971.2|  257|Caenorhabditis elegans Hypothetical
           protein T22E7.2 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 104 QPASSRFRKKVGKHHFAQEKFES 36
           +PASS  ++KV   HF ++ +ES
Sbjct: 5   EPASSELKEKVKSEHFVRKPYES 27


>Z81462-2|CAB03841.1|  263|Caenorhabditis elegans Hypothetical
           protein C04H5.2 protein.
          Length = 263

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 109 PSSYSKATSTARAPATACLPLWFAHPRTTARSTRAQK*TCTNSVAA 246
           P++ ++  +T     T CL  W  +PRT + S   Q   C   +++
Sbjct: 50  PTTTTEGPTTTLKLTTICLEGWTKYPRTPSASNNNQDAYCLKFISS 95


>U00054-1|AAA50716.1|   91|Caenorhabditis elegans Hypothetical
           protein K07E12.2 protein.
          Length = 91

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 78  LSETRRRWLKAFKLFKGNKHRKSSRNRV 161
           LSE R +W K  +  K NK +K +  ++
Sbjct: 20  LSEGRGKWFKGVETRKSNKEKKKNSKKI 47


>AF067940-3|AAC19207.1|  272|Caenorhabditis elegans Hypothetical
           protein F36F12.8 protein.
          Length = 272

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 62  GACRLSF*NEKTLVEGLQAIQRQQAP 139
           G C  +F N+K L E  +AIQ   AP
Sbjct: 99  GCCNWTFSNKKALTEHAKAIQETGAP 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,870,883
Number of Sequences: 27780
Number of extensions: 115187
Number of successful extensions: 387
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)