BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1222X (475 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical ... 27 5.2 Z81462-2|CAB03841.1| 263|Caenorhabditis elegans Hypothetical pr... 27 6.9 U00054-1|AAA50716.1| 91|Caenorhabditis elegans Hypothetical pr... 27 9.1 AF067940-3|AAC19207.1| 272|Caenorhabditis elegans Hypothetical ... 27 9.1 >AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical protein T22E7.2 protein. Length = 257 Score = 27.5 bits (58), Expect = 5.2 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = -3 Query: 104 QPASSRFRKKVGKHHFAQEKFES 36 +PASS ++KV HF ++ +ES Sbjct: 5 EPASSELKEKVKSEHFVRKPYES 27 >Z81462-2|CAB03841.1| 263|Caenorhabditis elegans Hypothetical protein C04H5.2 protein. Length = 263 Score = 27.1 bits (57), Expect = 6.9 Identities = 12/46 (26%), Positives = 22/46 (47%) Frame = +1 Query: 109 PSSYSKATSTARAPATACLPLWFAHPRTTARSTRAQK*TCTNSVAA 246 P++ ++ +T T CL W +PRT + S Q C +++ Sbjct: 50 PTTTTEGPTTTLKLTTICLEGWTKYPRTPSASNNNQDAYCLKFISS 95 >U00054-1|AAA50716.1| 91|Caenorhabditis elegans Hypothetical protein K07E12.2 protein. Length = 91 Score = 26.6 bits (56), Expect = 9.1 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +3 Query: 78 LSETRRRWLKAFKLFKGNKHRKSSRNRV 161 LSE R +W K + K NK +K + ++ Sbjct: 20 LSEGRGKWFKGVETRKSNKEKKKNSKKI 47 >AF067940-3|AAC19207.1| 272|Caenorhabditis elegans Hypothetical protein F36F12.8 protein. Length = 272 Score = 26.6 bits (56), Expect = 9.1 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 62 GACRLSF*NEKTLVEGLQAIQRQQAP 139 G C +F N+K L E +AIQ AP Sbjct: 99 GCCNWTFSNKKALTEHAKAIQETGAP 124 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,870,883 Number of Sequences: 27780 Number of extensions: 115187 Number of successful extensions: 387 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 382 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 387 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 860942358 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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