Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1222X
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55060.1 68418.m06862 expressed protein                             27   4.9  
At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly ...    27   6.5  
At4g36760.1 68417.m05216 aminopeptidase P similar to Xaa-Pro ami...    27   8.6  
At1g61360.1 68414.m06915 S-locus lectin protein kinase family pr...    27   8.6  

>At5g55060.1 68418.m06862 expressed protein
          Length = 645

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 81  SETRRRWLKAFKLFKGNKHRKSSR 152
           SET+RR+ +   +F+G+K RK +R
Sbjct: 580 SETKRRFKRLGFIFRGSKERKQTR 603


>At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly
           identical to acetyl-CoA carboxylase 2 (ACC2)
           [Arabidopsis thaliana] GI:11869928
          Length = 1755

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +3

Query: 30  YKTFELFLCKMVLADFLSETRRRWLKAFKLFKGNKHRKSSRNRVSPSLVRSPSYNGTVDA 209
           YK FE+     +  DF ++  +  L+A       K R S    + P +    SY G  ++
Sbjct: 342 YKEFEIISKTSLTPDFPAKLLKGILEAHLSSCDEKERGSLERLIEPLMSLVKSYEGGRES 401

Query: 210 RSEIDVH 230
            + + VH
Sbjct: 402 HARLIVH 408


>At4g36760.1 68417.m05216 aminopeptidase P similar to Xaa-Pro
           aminopeptidase 2 [Lycopersicon esculentum] GI:15384991;
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 634

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 54  CKMVLADFLSETRRRWLK 107
           CK +LA F+++T   WLK
Sbjct: 607 CKDILAPFMNQTEMEWLK 624


>At1g61360.1 68414.m06915 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 821

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 114 KLFKGNKHRKSSRNRVSPSLVRSPSYNGTVDARSEIDVHKF 236
           +LF GN+H+ S+ + V      SP Y  T     + D++ F
Sbjct: 646 RLFHGNQHQDSTGSVVGTLGYMSPEYAWTGTFSEKSDIYSF 686


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,411,026
Number of Sequences: 28952
Number of extensions: 109108
Number of successful extensions: 320
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)