Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1219
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   3.0  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   4.0  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   4.0  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   4.0  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   4.0  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    21   9.2  

>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 336 SH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVTRKCISLVSPYFNIDVSQID 500
           +H  E + +V+EEP     R    +  LNH+  +VT     +V+  F   +SQ D
Sbjct: 40  THNNEMYHSVKEEPIYESCRFSINQPYLNHFDNSVT----PMVNHDFTQHLSQYD 90



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 224 NQTSRYRRIKTSG-SSQWRRLQQTEAQSFHWCRRHGDS 114
           NQ   +++   +  S++   + +  A  + W + HGDS
Sbjct: 141 NQYENFQQYDNNNFSAEENSVSEPPANFYPWMKAHGDS 178


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 60  TSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYS-TVSRS 218
           ++PRS      SS +     S  S+   ++  RLL  +P+      YS T+  S
Sbjct: 152 STPRSSPAETASSLSPQSVASTASSADHQIVDRLLSHAPIDSANQWYSQTIDNS 205


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 336 SH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVTRKCISLVSPYFNIDVSQID 500
           +H  E +  V+EEP     R    +  LNH+  +VT     +V+  F   +SQ D
Sbjct: 40  THNNEMYHRVKEEPIYESCRFSINQPYLNHFDNSVT----PMVNHDFTQHLSQYD 90



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 224 NQTSRYRRIKTSG-SSQWRRLQQTEAQSFHWCRRHGDS 114
           NQ   +++   +  S++   + +  A  + W + HGDS
Sbjct: 141 NQYENFQQYDNNNFSAEENSVSEPPANFYPWMKAHGDS 178


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 336 SH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVTRKCISLVSPYFNIDVSQID 500
           +H  E +  V+EEP     R    +  LNH+  +VT     +V+  F   +SQ D
Sbjct: 40  THNNEMYHRVKEEPIYESCRFSINQPYLNHFDNSVT----PMVNHDFTQHLSQYD 90



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 224 NQTSRYRRIKTSG-SSQWRRLQQTEAQSFHWCRRHGDS 114
           NQ   +++   +  S++   + +  A  + W + HGDS
Sbjct: 141 NQYENFQQYDNNNFSAEENSVSEPPANFYPWMKAHGDS 178


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 60  TSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYS-TVSRS 218
           ++PRS      SS +     S  S+   ++  RLL  +P+      YS T+  S
Sbjct: 143 STPRSSPAETASSLSPQSVASTASSADHQIVDRLLSHAPIDSANQWYSQTIDNS 196


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/29 (27%), Positives = 10/29 (34%)
 Frame = -2

Query: 643 WRPLAVYWRKARLVVRI*IKSGVAVRRHC 557
           WR     W    L   + I S    + HC
Sbjct: 12  WRAFTASWSPDTLAKNLGINSSFVHKEHC 40


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,489
Number of Sequences: 336
Number of extensions: 3375
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)