Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1219
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    29   0.61 
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    29   0.61 
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    27   2.5  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    27   2.5  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   3.3  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    26   4.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.7  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    26   5.7  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   7.5  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   7.5  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   7.5  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   7.5  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   7.5  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   7.5  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    25   7.5  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   7.5  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   9.9  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   9.9  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   9.9  

>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 244 RDSGKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNPLPTKDVIEQE 408
           +D G   L D D   +EK+K K     EN D P K + T   E+       ++E E
Sbjct: 159 KDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKKDRKTRKKEEKARKLASMLESE 214


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = +2

Query: 62  LTKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKF 220
           L K +TDL +Q E FN  C +  D +  +V   A       E V  E+    + DG+E  
Sbjct: 428 LNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYV 487

Query: 221 DSSQ 232
            SSQ
Sbjct: 488 SSSQ 491


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 238 LQLARIKLLDTVE*-RLLGLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 83
           +QL   KL +T +     G ++G  +S    +LFIGVD     G+  F   LQ
Sbjct: 367 VQLFDTKLFNTSQVIDFFGEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 262 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 381
           P  D D I+  +E   F NG+ +FD   +K+  T  K+P+
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 286 EAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 417
           E EKE  K     ENF+  + +  E  E+  L     +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 152 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQGRT 262
           LP +ED+   +   SL D   + D+SQL   E    T
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKENDSFT 153


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 560 MATYSNPGFYSNPNDKSRLTPINSEWTP 643
           +++YS+P     P+  S  +P +SE+TP
Sbjct: 103 VSSYSDPATSQLPSSTSFFSPTSSEYTP 130


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 384 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQI 497
           HKG +  +E+++  Y+  VTRK I   + P +  + SQ+
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQV 253


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 295 KEKNKFLNGIENFDPTKLKHTETCEKN 375
           K + K L G ++ DP  L+  + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 189 WVFSVATSSADGSTIFSLVSTSRRQL 112
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 189 WVFSVATSSADGSTIFSLVSTSRRQL 112
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +2

Query: 56  KDLTKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQL 235
           +DL  +A    S L   NT   R +D N K  L   E++  ++  + L    EKF + + 
Sbjct: 786 RDLVNMAKRFLSSLFSVNT---RKMDVNVKTDLVIGENIELQRYLQQLTQYSEKFLNKES 842

Query: 236 KHT 244
           ++T
Sbjct: 843 ENT 845


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 189 WVFSVATSSADGSTIFSLVSTSRRQL 112
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 189 WVFSVATSSADGSTIFSLVSTSRRQL 112
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 192 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 94
           FW +S+  S   G  I SL +   RQ + +PSS
Sbjct: 83  FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = +2

Query: 47  PSLKDLTKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 217
           P  K L K+  +L+S L+    SCL+D  T+ K ++       +EKTQ+ +FD +++
Sbjct: 14  PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKR 63


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +3

Query: 282 YRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 392
           +  GE     P +H EL  H    H    E+   HKG
Sbjct: 331 HEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 59  DLTKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVAT 178
           DLTKV  D  +  +    S +     N  I+LP  E++ T
Sbjct: 144 DLTKVLNDFVTLSKPAYDSSIHPTRENADIILPQKENIDT 183


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 542 GNTAWAMATYSNPGFYSNPNDKSRLTPINSEWTP 643
           GNT +    + NP F   PN   R+      W P
Sbjct: 90  GNTLYTYYGFDNPIFLCGPNGAPRMCGTCKCWLP 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,208
Number of Sequences: 5004
Number of extensions: 57482
Number of successful extensions: 201
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)