Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1219
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 1.9
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 30 1.9
12_01_0072 + 609254-609722,610355-610421,610652-610745,610984-61... 29 3.4
11_01_0071 + 565349-565814,566626-566692,567255-567288,567747-56... 29 3.4
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 3.4
06_03_0165 - 17399535-17400178,17400378-17400522 29 4.5
12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888... 28 7.8
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 7.8
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 7.8
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 80 DLKSQLEGFNTSCLRDVDTNEKIVL 154
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 39 ETLPP*KTSPRSPQT*RVSSKASTPAVSVTST 134
+TLPP + SP SP T SSK TP+ S S+
Sbjct: 30 DTLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>12_01_0072 +
609254-609722,610355-610421,610652-610745,610984-611127
Length = 257
Score = 29.1 bits (62), Expect = 3.4
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +3
Query: 27 PAP*ETLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPL-RRPRSLYS 203
PA T PP RSP+ R S A+ P VT+ L T+P+ RPR L S
Sbjct: 3 PAAATTTPPPSERHRSPKVKRQRSAAAQPLGDVTN-----LLLPSTPTNPITARPRPLPS 57
Query: 204 --TVSRSLIRAS*S-TPRLREEPASGQ 275
T + S AS S TP + A+G+
Sbjct: 58 DTTAAASTCSASPSHTPVSKPSSATGE 84
>11_01_0071 +
565349-565814,566626-566692,567255-567288,567747-567860
Length = 226
Score = 29.1 bits (62), Expect = 3.4
Identities = 32/87 (36%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +3
Query: 27 PAP*ETLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLR-RPRSLYS 203
PA T PP RSP+ R S A+ P VT+ L T+P RPR L S
Sbjct: 3 PAAATTTPPPSERHRSPKVKRQRSAAAQPLGDVTN-----LLLPSTPTNPTTGRPRPLPS 57
Query: 204 --TVSRSLIRAS*S-TPRLREEPASGQ 275
T + S AS S TP + ASG+
Sbjct: 58 DTTAAASTCSASPSHTPVSKPSSASGE 84
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 87 RVSSKASTPAVSVTSTPMKRLCFR 158
+VSS++S+P SVT+ ++ +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>06_03_0165 - 17399535-17400178,17400378-17400522
Length = 262
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 536 YNGNTAWAMATYSNPGFYSNPNDKSRLTPINSEWTP 643
++G W T G YS D +RLT I SE P
Sbjct: 221 FSGEYRWCYPTPVREGIYSLATDANRLTTIFSEENP 256
>12_02_0768 -
22988119-22988223,22988337-22988558,22988645-22988810,
22989176-22989181,22989281-22989453,22989737-22989928,
22990034-22990211,22990302-22990444,22990666-22990755,
22990869-22990991,22991391-22991568,22992213-22992442,
22992557-22992616,22992731-22992798,22992908-22992953
Length = 659
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +3
Query: 261 PASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHYFITV 440
PA G R Y S + +P REL + A A+ ++R+E A H + +++
Sbjct: 492 PAWG-RAYIS-TARRVVPSVPRELEEYIATAYSSIRQEEAKSNAPH---SYTTIRTLLSI 546
Query: 441 TRKCISLVSPYFNIDVSQIDL 503
R I+L F+ V+Q D+
Sbjct: 547 LRISIALARLRFSETVAQSDV 567
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 56 KDLTKVATDLKSQLEGFNTSCLRDVDTNEKI 148
K+L + DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 56 KDLTKVATDLKSQLEGFNTSCLRDVDTNEKI 148
K+L + DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,229,552
Number of Sequences: 37544
Number of extensions: 398063
Number of successful extensions: 1210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -