Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1219
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 49 3e-06
AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical... 30 1.3
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z80214-3|CAB02265.1| 249|Caenorhabditis elegans Hypothetical pr... 27 9.2
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 27 9.2
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/53 (45%), Positives = 31/53 (58%)
Frame = +2
Query: 92 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTET 250
++E F+++ L EKIVLPSA+D+ EK L D I F S LK TET
Sbjct: 53 EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTET 105
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = +1
Query: 256 KNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEK 411
KN LP K+ + EK+ + ++ IE+FD TKL T EK LP+ D I+QEK
Sbjct: 32 KNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +1
Query: 265 LPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 414
LP D I+ EK+ + + I NF LK TET EKN LP+ + +EK+
Sbjct: 73 LPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +2
Query: 119 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHT 244
L+ V+T EK VLP+ EDVA EK IE FDS++L T
Sbjct: 24 LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHST 65
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 47 PSLKDLT--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKF 220
PS D+ K +L ++ F + L+ +T EK VLPS DVA EKT + F
Sbjct: 74 PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQM----AASF 129
Query: 221 DSSQLKHTET 250
D S L H ET
Sbjct: 130 DKSALHHVET 139
Score = 30.7 bits (66), Expect = 0.99
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 343 KLKHTETCEKNPLPTKDVIEQEK 411
+LK ET EKN LPTK+ + +EK
Sbjct: 23 ELKKVETTEKNVLPTKEDVAEEK 45
>AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical
protein T12B5.3 protein.
Length = 304
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 511 ITSFIFVFVQWQHCLGNGDVQQPRILFKS*RQVAPYANKQRVDAINRSNTDN 666
ITSFI F++ + C+ ++ R+LF + P+ N + ++ I S TDN
Sbjct: 131 ITSFIN-FLKAKDCIHVKEIHFNRLLFDDILSILPFFNAKVLENIKLSETDN 181
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = +3
Query: 6 KYIDSQWPAP*ETLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRR 185
K +S P+ E + P SP Q K T A S S+PM SP+ R
Sbjct: 615 KNFESPLPSSTENVHPASNSPPMKQIEGFEFKTPTRARSALSSPMSNFMNGGDNDSPISR 674
Query: 186 PRS 194
P S
Sbjct: 675 PAS 677
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = +3
Query: 6 KYIDSQWPAP*ETLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRR 185
K +S P+ E + P SP Q K T A S S+PM SP+ R
Sbjct: 615 KNFESPLPSSTENVHPASNSPPMKQIEGFEFKTPTRARSALSSPMSNFMNGGDNDSPISR 674
Query: 186 PRS 194
P S
Sbjct: 675 PAS 677
>Z80214-3|CAB02265.1| 249|Caenorhabditis elegans Hypothetical
protein T23B5.3c protein.
Length = 249
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = +3
Query: 6 KYIDSQWPAP*ETLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRR 185
K +S P+ E + P SP Q K T A S S+PM SP+ R
Sbjct: 48 KNFESPLPSSTENVHPASNSPPMKQIEGFEFKTPTRARSALSSPMSNFMNGGDNDSPISR 107
Query: 186 PRS 194
P S
Sbjct: 108 PAS 110
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 291 GEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHY 428
G+ + Q P+ + RS + G++ P P A EI L+HY
Sbjct: 320 GQNQPQQPQYQQHPRSQSVDPSGDMNGGPRPIHQNFSASEIELHHY 365
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,268,395
Number of Sequences: 27780
Number of extensions: 328264
Number of successful extensions: 1157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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