Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1219
(671 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 31 0.70
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 29 3.7
At1g23230.1 68414.m02906 expressed protein 29 3.7
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 28 4.9
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 28 4.9
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 28 4.9
At1g32120.1 68414.m03952 expressed protein contains Pfam profile... 28 4.9
At3g55130.1 68416.m06122 ABC transporter family protein breast c... 28 6.5
At1g55440.1 68414.m06341 DC1 domain-containing protein contains ... 28 6.5
At1g16730.1 68414.m02007 expressed protein 28 6.5
At5g20540.1 68418.m02439 expressed protein 27 8.6
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low... 27 8.6
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 31.1 bits (67), Expect = 0.70
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 63 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRSLIRAS* 236
SP ++ R S++ P+ S +S R + ++ PL R RSLYS+VSRS R+
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQSRSKS 252
Query: 237 STPRLREEPAS 269
+ P S
Sbjct: 253 RSRSRSNSPVS 263
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -2
Query: 232 LARIKLLDTVE*RLLGLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 65
L R+ + + + ++ G+ +KHNL IG+D AG + + LQ C ++G
Sbjct: 25 LFRVLCVGPIPTNISFIMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 391 PLWGAGSSRTFPCASA*WDRSSRC-RSGICSFPSP 290
PL+G + + P S W+R+ RC R I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Frame = +2
Query: 41 DTPS--LKDLTKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA-TEKTQKSLFD-- 205
D+PS L+D+ ++ +LK L+G + VDTN +AE A EK +L
Sbjct: 535 DSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTNLDAEDRAAERKAEVEKAVSTLAQKS 594
Query: 206 -GIEKFDS 226
EKFDS
Sbjct: 595 KPTEKFDS 602
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +3
Query: 237 STPRLREEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREIS 416
S R E+ A R + + K + ER + SH ++ ++R EP H RE+
Sbjct: 485 SLKRSAEQKAQEIRAAAASDFKTMLREREISINSHWSKVKDSLRNEPRYRSVAHEDREVF 544
Query: 417 LNHY 428
Y
Sbjct: 545 YYEY 548
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 262 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 408
P P+ + + EK+ FLNG K KNP+P K I +
Sbjct: 384 PYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432
>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 1206
Score = 28.3 bits (60), Expect = 4.9
Identities = 25/109 (22%), Positives = 42/109 (38%)
Frame = +3
Query: 57 KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYSTVSRSLIRAS* 236
KTS RSP+ + + P+ V+ P + +S ++P + + R
Sbjct: 749 KTSQRSPEAINSRGQKNPPSPRVSKEPYMSSSLSVSSSSTRKKPPRSHEAANS---RGYN 805
Query: 237 STPRLREEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAP 383
TP LR + + Y+S R + RSH A + P+P
Sbjct: 806 HTPSLR----ASKEPYKSSSLSGSSSTRKKPPRSHEASSSRGYNHPPSP 850
>At3g55130.1 68416.m06122 ABC transporter family protein breast
cancer resistance protein 1 BCRP1, Mus musculus,
EMBL:NP_036050
Length = 725
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 38 RDTPSLKDLTKVATDLKSQLEGFNTSCLRDVDTNEK 145
R P +++++ A DL +LEG N VD NEK
Sbjct: 321 RPIPEKENISEFALDLVRELEGSNEGTKALVDFNEK 356
>At1g55440.1 68414.m06341 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/61 (22%), Positives = 26/61 (42%)
Frame = -1
Query: 575 CCTSPLPRQCCHCTKTKIKLVMATQIDLTYINIKIRRY*RDTFASNCYKVVVQADFSCSM 396
CC PL + HC+ K L + + L + I + T C ++ + D +C +
Sbjct: 160 CCNKPLDKTYYHCSICKFNLNLPCSMMLPLLTISHMKSHEHTLTLFCTRLPMSCD-ACGL 218
Query: 395 T 393
+
Sbjct: 219 S 219
>At1g16730.1 68414.m02007 expressed protein
Length = 202
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +2
Query: 80 DLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK----TQKSLFDGIEKFDSSQLKHTE 247
D +G L + T +++PS TEK +K DG E+ +S K E
Sbjct: 121 DFAGAAQGMTKDALHRIKTQLAVIVPSVSPAVTEKIVDDAEKEAIDGEEEDES---KSKE 177
Query: 248 TQGRTRF 268
+ G+ F
Sbjct: 178 SSGKLPF 184
>At5g20540.1 68418.m02439 expressed protein
Length = 384
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 35 VRDTPSLKDLTKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 181
+ TP + ++ T+ S +S RD D +E++ + +A DV E
Sbjct: 282 LNSTPKVSSISVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNE 330
>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
similarity to DNA polymerase kappa [Mus musculus]
GI:14279087; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 785
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 187 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 62
GL G++ + +++ +T +AGV A L +VC D+ +
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,529,615
Number of Sequences: 28952
Number of extensions: 310396
Number of successful extensions: 1067
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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