Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1218X
(527 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 30 0.19
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 1.7
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 27 1.7
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 2.3
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.3
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.0
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 4.0
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 5.3
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 5.3
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 5.3
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 25 9.2
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 9.2
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 25 9.2
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 25 9.2
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 30.3 bits (65), Expect = 0.19
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +3
Query: 264 PAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 428
P H + GE + GE P +H EL H H E+ HKG
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +1
Query: 235 IRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFL----NGIENFDPTKLKHTETC 402
+ R + + + +H E+ E P+ ++ + EKEK+ + +E+ P H T
Sbjct: 789 LSRRKSMPAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQ 848
Query: 403 EKNPLPTKDVIEQEKSA 453
+K+P+ + +++ A
Sbjct: 849 QKSPVEKPKKLRKDRYA 865
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 298 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 417
P D D I+ +E F NG+ +FD +K+ T K+P+
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 322 EAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 453
E EKE K ENF+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -3
Query: 216 SVATSSADRSTIFSLVSTSPRQLVLKPSS*LFKSVATLXRSFREGVSLTEQAI 58
S+ +++ RST+ VS S + ++ KP + F + L + G +T +I
Sbjct: 46 SIVENTSGRSTLLRSVSRSIKYVLSKPGAFFFSAPFALVFTLYSGTYMTANSI 98
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.8 bits (54), Expect = 4.0
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +1
Query: 217 EDPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 396
+ PE ++Y+E D K + P+PD A A EK K +G+ N + +
Sbjct: 89 KSPEGIEQKYQEEDLKDDKKSNETIATPVPDA-ASRASLEKQK--SGLTNLEKSTHVVLI 145
Query: 397 TCEKNPLPTKDVIEQEK 447
C + + K ++ EK
Sbjct: 146 KCIEQLIQIKVCMKNEK 162
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 4.0
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +1
Query: 307 DKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA*NHYFITVT 480
DK+ + + KN L G E K K T K P TKD +++ H F TVT
Sbjct: 33 DKEVAKLLQLKNLKLGGSEVSG--KKKDTSFTLKTPKGTKDWCDKDVVLREHIFSTVT 88
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 331 KEKNKFLNGIENFDPTKLKHTETCEKN 411
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 250 EVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 372
EV +++ + T E P D DA+ KN F +E+FD
Sbjct: 87 EVKTTEPQDLSTAETAPKVDIDAVPTIDGKNIFEIDLESFD 127
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 6 LSARIFYPLPHQKYIDSQWPAR*VTLP 86
+SA F P+P+ Y D+ + A+ V P
Sbjct: 148 VSANTFIPMPYAHYTDNMYHAKPVNRP 174
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 24.6 bits (51), Expect = 9.2
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 217 EDPEVFIRRY-REVDSSQLKHTETQEK 294
ED ++FI+RY R VDS+ L+ E + +
Sbjct: 21 EDLKIFIKRYERSVDSTLLEIDENKRE 47
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 24.6 bits (51), Expect = 9.2
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +3
Query: 321 RSGEGKEQIPERHRELRSH*AE----AHGNVREEPAPHKG 428
R G +IP+RHR+ R + G RE+P H G
Sbjct: 6 RLSSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYG 45
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 24.6 bits (51), Expect = 9.2
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 217 EDPEVFIRRY-REVDSSQLKHTETQEK 294
ED ++FI+RY R VDS+ L+ E + +
Sbjct: 21 EDLKIFIKRYERSVDSTLLEIDENKRE 47
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 226 EVFIRRYREVDSS--QLKHTETQEKNPLPDKDAIEAEKEKN 342
EV ++E SS ++ E+N P+ + +E EKE+N
Sbjct: 404 EVEANNHQEKPSSLPAVEQINVNEENNTPETEGLEDEKEEN 444
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,201
Number of Sequences: 5004
Number of extensions: 38274
Number of successful extensions: 142
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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