BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1218X (527 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 31 0.76 05_03_0261 + 11214086-11214148,11215019-11215462,11216504-112166... 29 1.7 06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724 28 4.0 03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 4.0 02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 4.0 01_06_0241 - 27813076-27813622,27813695-27814125 28 5.3 05_07_0101 - 27690927-27691208,27691695-27692474 27 7.1 03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 27 7.1 01_05_0033 + 17390571-17390894,17394152-17394199,17394479-173945... 27 7.1 10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658... 27 9.3 >07_03_1577 - 27869596-27869682,27869769-27869869,27869956-27869995, 27870879-27870953 Length = 100 Score = 30.7 bits (66), Expect = 0.76 Identities = 10/27 (37%), Positives = 20/27 (74%) Frame = +2 Query: 116 DLKSQLEGFNTSCLGDVDTNEKIVLRS 196 DL+S+L+ NT CL + + N+K+++ + Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLIIEN 80 >05_03_0261 + 11214086-11214148,11215019-11215462,11216504-11216666, 11218145-11218441,11218842-11218858 Length = 327 Score = 29.5 bits (63), Expect = 1.7 Identities = 14/48 (29%), Positives = 29/48 (60%) Frame = +1 Query: 217 EDPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGI 360 E+ E I++ RE++S +KH+ET+++ + + + ++ LNGI Sbjct: 172 EEIEENIQKTREIESEIVKHSETEKEYIMKESELMKGVSIAEFELNGI 219 >06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724 Length = 353 Score = 28.3 bits (60), Expect = 4.0 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +2 Query: 110 ATDLKSQLEGFNTSCLGDVDTNEKIVLRSAEDVATEKT 223 A+ + LE +SCL D + NE+ R ED AT + Sbjct: 160 ASKPRCNLESAASSCLTDTNENERASARMMEDQATSSS 197 >03_05_0070 - 20478396-20478505,20478605-20478780,20481162-20481265, 20481346-20481504,20481718-20481857,20482222-20482311, 20482902-20482970,20484295-20484516,20486175-20486293, 20486377-20486492,20488058-20488146,20488790-20488883 Length = 495 Score = 28.3 bits (60), Expect = 4.0 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +2 Query: 92 KDLXKVATDLKSQLEGFNTSCLGDVDTNEKI 184 K+L + DLKS+LEG+NT D++ + + Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296 >02_03_0171 + 15945591-15945681,15947068-15947138,15947715-15947817, 15948189-15948328,15948535-15948693,15948775-15948878, 15950373-15950548,15952643-15952832,15953704-15953803, 15954171-15954339,15954908-15954990,15955073-15955149, 15955386-15955557 Length = 544 Score = 28.3 bits (60), Expect = 4.0 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +2 Query: 92 KDLXKVATDLKSQLEGFNTSCLGDVDTNEKI 184 K+L + DLKS+LEG+NT D++ + + Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118 >01_06_0241 - 27813076-27813622,27813695-27814125 Length = 325 Score = 27.9 bits (59), Expect = 5.3 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Frame = +3 Query: 261 EPAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRS-H*AEAHGNVREEPAPHK 425 EP H + ++ R +R+ ++ + HR RS H A + V + H+ Sbjct: 23 EPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78 >05_07_0101 - 27690927-27691208,27691695-27692474 Length = 353 Score = 27.5 bits (58), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 9 SARIFYPLPHQKYIDSQWPAR 71 SA F+ LPHQ+ +D PAR Sbjct: 72 SAMAFFALPHQEKLDMSGPAR 92 >03_04_0013 + 16436438-16436536,16437257-16437742,16437791-16437826, 16437835-16438323,16438951-16439622 Length = 593 Score = 27.5 bits (58), Expect = 7.1 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 298 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKH 390 P ++ E EKEK K +N + P KLKH Sbjct: 489 PFTEEKLQELEKEKEKKINDMAKGWPEKLKH 519 >01_05_0033 + 17390571-17390894,17394152-17394199,17394479-17394526, 17395224-17395400,17395492-17395642,17395742-17395828, 17397236-17397360,17397608-17397726,17399983-17400082, 17400188-17400223 Length = 404 Score = 27.5 bits (58), Expect = 7.1 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -2 Query: 145 VEAFELTLQVCCDLGEVFQGGSVTHRAGHCES 50 V+ E+TL VC LG+ F GG + R CE+ Sbjct: 282 VDDSEVTLNVC--LGKQFSGGELYFRGIRCEN 311 >10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512, 6587593-6587844,6587932-6588042,6588133-6588214, 6588299-6588382,6588464-6588658 Length = 923 Score = 27.1 bits (57), Expect = 9.3 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 223 PEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAE 330 P+ RR + +D ++ KH TQE +DA +A+ Sbjct: 258 PQALERRKKLLDLAKKKHISTQEAQSYKKRDAYKAK 293 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,677,272 Number of Sequences: 37544 Number of extensions: 261572 Number of successful extensions: 791 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 770 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 791 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1166441080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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