Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1218X
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 31 0.76
05_03_0261 + 11214086-11214148,11215019-11215462,11216504-112166... 29 1.7
06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724 28 4.0
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 4.0
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 4.0
01_06_0241 - 27813076-27813622,27813695-27814125 28 5.3
05_07_0101 - 27690927-27691208,27691695-27692474 27 7.1
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 27 7.1
01_05_0033 + 17390571-17390894,17394152-17394199,17394479-173945... 27 7.1
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658... 27 9.3
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 30.7 bits (66), Expect = 0.76
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 116 DLKSQLEGFNTSCLGDVDTNEKIVLRS 196
DL+S+L+ NT CL + + N+K+++ +
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLIIEN 80
>05_03_0261 +
11214086-11214148,11215019-11215462,11216504-11216666,
11218145-11218441,11218842-11218858
Length = 327
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +1
Query: 217 EDPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGI 360
E+ E I++ RE++S +KH+ET+++ + + + ++ LNGI
Sbjct: 172 EEIEENIQKTREIESEIVKHSETEKEYIMKESELMKGVSIAEFELNGI 219
>06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724
Length = 353
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 110 ATDLKSQLEGFNTSCLGDVDTNEKIVLRSAEDVATEKT 223
A+ + LE +SCL D + NE+ R ED AT +
Sbjct: 160 ASKPRCNLESAASSCLTDTNENERASARMMEDQATSSS 197
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 92 KDLXKVATDLKSQLEGFNTSCLGDVDTNEKI 184
K+L + DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 92 KDLXKVATDLKSQLEGFNTSCLGDVDTNEKI 184
K+L + DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 261 EPAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRS-H*AEAHGNVREEPAPHK 425
EP H + ++ R +R+ ++ + HR RS H A + V + H+
Sbjct: 23 EPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78
>05_07_0101 - 27690927-27691208,27691695-27692474
Length = 353
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 9 SARIFYPLPHQKYIDSQWPAR 71
SA F+ LPHQ+ +D PAR
Sbjct: 72 SAMAFFALPHQEKLDMSGPAR 92
>03_04_0013 +
16436438-16436536,16437257-16437742,16437791-16437826,
16437835-16438323,16438951-16439622
Length = 593
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 298 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKH 390
P ++ E EKEK K +N + P KLKH
Sbjct: 489 PFTEEKLQELEKEKEKKINDMAKGWPEKLKH 519
>01_05_0033 +
17390571-17390894,17394152-17394199,17394479-17394526,
17395224-17395400,17395492-17395642,17395742-17395828,
17397236-17397360,17397608-17397726,17399983-17400082,
17400188-17400223
Length = 404
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 145 VEAFELTLQVCCDLGEVFQGGSVTHRAGHCES 50
V+ E+TL VC LG+ F GG + R CE+
Sbjct: 282 VDDSEVTLNVC--LGKQFSGGELYFRGIRCEN 311
>10_02_0195 +
6578384-6578629,6578710-6579300,6586302-6587512,
6587593-6587844,6587932-6588042,6588133-6588214,
6588299-6588382,6588464-6588658
Length = 923
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 223 PEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAE 330
P+ RR + +D ++ KH TQE +DA +A+
Sbjct: 258 PQALERRKKLLDLAKKKHISTQEAQSYKKRDAYKAK 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,677,272
Number of Sequences: 37544
Number of extensions: 261572
Number of successful extensions: 791
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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