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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1218X
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699...    31   0.76 
05_03_0261 + 11214086-11214148,11215019-11215462,11216504-112166...    29   1.7  
06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724     28   4.0  
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812...    28   4.0  
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478...    28   4.0  
01_06_0241 - 27813076-27813622,27813695-27814125                       28   5.3  
05_07_0101 - 27690927-27691208,27691695-27692474                       27   7.1  
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378...    27   7.1  
01_05_0033 + 17390571-17390894,17394152-17394199,17394479-173945...    27   7.1  
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658...    27   9.3  

>07_03_1577 -
           27869596-27869682,27869769-27869869,27869956-27869995,
           27870879-27870953
          Length = 100

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +2

Query: 116 DLKSQLEGFNTSCLGDVDTNEKIVLRS 196
           DL+S+L+  NT CL + + N+K+++ +
Sbjct: 54  DLQSKLDAVNTECLAEKEKNKKLIIEN 80


>05_03_0261 +
           11214086-11214148,11215019-11215462,11216504-11216666,
           11218145-11218441,11218842-11218858
          Length = 327

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = +1

Query: 217 EDPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGI 360
           E+ E  I++ RE++S  +KH+ET+++  + + + ++        LNGI
Sbjct: 172 EEIEENIQKTREIESEIVKHSETEKEYIMKESELMKGVSIAEFELNGI 219


>06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724
          Length = 353

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 110 ATDLKSQLEGFNTSCLGDVDTNEKIVLRSAEDVATEKT 223
           A+  +  LE   +SCL D + NE+   R  ED AT  +
Sbjct: 160 ASKPRCNLESAASSCLTDTNENERASARMMEDQATSSS 197


>03_05_0070 -
           20478396-20478505,20478605-20478780,20481162-20481265,
           20481346-20481504,20481718-20481857,20482222-20482311,
           20482902-20482970,20484295-20484516,20486175-20486293,
           20486377-20486492,20488058-20488146,20488790-20488883
          Length = 495

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 92  KDLXKVATDLKSQLEGFNTSCLGDVDTNEKI 184
           K+L +   DLKS+LEG+NT    D++  + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296


>02_03_0171 +
           15945591-15945681,15947068-15947138,15947715-15947817,
           15948189-15948328,15948535-15948693,15948775-15948878,
           15950373-15950548,15952643-15952832,15953704-15953803,
           15954171-15954339,15954908-15954990,15955073-15955149,
           15955386-15955557
          Length = 544

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 92  KDLXKVATDLKSQLEGFNTSCLGDVDTNEKI 184
           K+L +   DLKS+LEG+NT    D++  + +
Sbjct: 88  KELDERMHDLKSELEGYNTGDSDDINKKKAL 118


>01_06_0241 - 27813076-27813622,27813695-27814125
          Length = 325

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +3

Query: 261 EPAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRS-H*AEAHGNVREEPAPHK 425
           EP   H  + ++     R +R+     ++ + HR  RS H A  +  V +    H+
Sbjct: 23  EPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78


>05_07_0101 - 27690927-27691208,27691695-27692474
          Length = 353

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 9   SARIFYPLPHQKYIDSQWPAR 71
           SA  F+ LPHQ+ +D   PAR
Sbjct: 72  SAMAFFALPHQEKLDMSGPAR 92


>03_04_0013 +
           16436438-16436536,16437257-16437742,16437791-16437826,
           16437835-16438323,16438951-16439622
          Length = 593

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 298 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKH 390
           P  ++   E EKEK K +N +    P KLKH
Sbjct: 489 PFTEEKLQELEKEKEKKINDMAKGWPEKLKH 519


>01_05_0033 +
           17390571-17390894,17394152-17394199,17394479-17394526,
           17395224-17395400,17395492-17395642,17395742-17395828,
           17397236-17397360,17397608-17397726,17399983-17400082,
           17400188-17400223
          Length = 404

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 145 VEAFELTLQVCCDLGEVFQGGSVTHRAGHCES 50
           V+  E+TL VC  LG+ F GG +  R   CE+
Sbjct: 282 VDDSEVTLNVC--LGKQFSGGELYFRGIRCEN 311


>10_02_0195 +
           6578384-6578629,6578710-6579300,6586302-6587512,
           6587593-6587844,6587932-6588042,6588133-6588214,
           6588299-6588382,6588464-6588658
          Length = 923

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 223 PEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAE 330
           P+   RR + +D ++ KH  TQE      +DA +A+
Sbjct: 258 PQALERRKKLLDLAKKKHISTQEAQSYKKRDAYKAK 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,677,272
Number of Sequences: 37544
Number of extensions: 261572
Number of successful extensions: 791
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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