Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1218X
(527 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 71 6e-13
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 36 0.027
SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05) 33 0.15
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14) 30 1.0
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 30 1.0
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 30 1.4
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 29 2.4
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 28 4.1
SB_39694| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 5.5
SB_45705| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) 27 7.2
SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_10367| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 70.9 bits (166), Expect = 6e-13
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +1
Query: 223 PEVF--IRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 396
PEV + D+S+LKH E QEKNPLP KD I E + + ++ FD +KLKH +
Sbjct: 674 PEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTESTETR--AEVKTFDHSKLKHVQ 731
Query: 397 TCEKNPLPTKDVIEQEKSA 453
T EKNPLP I QEK++
Sbjct: 732 TEEKNPLPDAKTIAQEKAS 750
Score = 66.5 bits (155), Expect = 1e-11
Identities = 33/66 (50%), Positives = 40/66 (60%)
Frame = +1
Query: 247 REVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTK 426
+ + S+L+H ET+EKN LP KD I EK F +G+E F KLKH ET EKNPLP
Sbjct: 455 KSFEKSKLQHVETKEKNTLPTKDTIADEKRTAPF-SGVEVFQKNKLKHVETLEKNPLPDA 513
Query: 427 DVIEQE 444
I E
Sbjct: 514 QNIRAE 519
Score = 65.7 bits (153), Expect = 2e-11
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +1
Query: 247 REVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKF--LNGIENFDPTKLKHTETCEKNPLP 420
+ D S+LKH ET EKNPLP ++ E ++ + +FD +KLKH E EKNPLP
Sbjct: 644 KSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLP 703
Query: 421 TKDVIEQEKS 450
TKD I E +
Sbjct: 704 TKDDITTEST 713
Score = 65.3 bits (152), Expect = 3e-11
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Frame = +1
Query: 256 DSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFDPTKLKHTETCEKNPLPTKD 429
D++ LKH +T+EKN LP + I+ E + ++F + E +F+ +KL+H ET EKN LPTKD
Sbjct: 418 DAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKD 477
Query: 430 VIEQEK 447
I EK
Sbjct: 478 TIADEK 483
Score = 64.1 bits (149), Expect = 7e-11
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = +1
Query: 223 PEVFIRRYR--EVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 396
PEV R + D+S+LKH ET+EK +P KD IEAE ++ +++FD +KLKH
Sbjct: 522 PEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVV 579
Query: 397 TCEKNPLPTKDVIEQE 444
T EKNPLPT + +E
Sbjct: 580 TQEKNPLPTPQTLHEE 595
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/63 (53%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +1
Query: 262 SQLKHTETQEKNPLPDKDAIEAEK--EKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVI 435
++LKH ET EKNPLPD I AE E + + FD +KLKH ET EK +PTKDVI
Sbjct: 497 NKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVI 556
Query: 436 EQE 444
E E
Sbjct: 557 EAE 559
Score = 58.4 bits (135), Expect = 3e-09
Identities = 27/63 (42%), Positives = 44/63 (69%)
Frame = +1
Query: 256 DSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVI 435
D ++LKH TQEK+ +P ++ I+ E ++ +++FD +KLKH ET EKNPLP+ V+
Sbjct: 611 DHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPLPSAAVL 668
Query: 436 EQE 444
++E
Sbjct: 669 KEE 671
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Frame = +1
Query: 247 REVDSSQLKHTETQEKNPLPDKDAIEAEK-EKNK-FLNGIENFDPTKLKHTETCEKNPLP 420
+ D S+LKH TQEKNPLP + E KNK + + +FD TKLKH T EK+ +P
Sbjct: 568 KSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMP 627
Query: 421 TKDVIEQE 444
+++ I++E
Sbjct: 628 SQEDIKEE 635
Score = 35.1 bits (77), Expect = 0.036
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 358 IENFDPTKLKHTETCEKNPLPTKDVIEQE 444
+ FD LKH +T EKN LP+ + I+QE
Sbjct: 414 VAKFDAANLKHVQTKEKNTLPSDETIKQE 442
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 35.5 bits (78), Expect = 0.027
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 86 SLKDLXKVATDLKSQLEGFNTSCLG-DVDTNEKIVLRSAEDVATEKTQKSLFD 241
SLK L K+ TDL+S ++G ++ L +V+ K+V + +T K + S F+
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFE 385
>SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -2
Query: 223 GLLSGDVFSRPKHNLFIGVD 164
GLL+GD+F RPK N+ I VD
Sbjct: 51 GLLAGDIFRRPKANILISVD 70
>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
Length = 385
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -2
Query: 223 GLLSGDVFSRPKHNLFIGVD 164
GLL+GD+F RPK N+ I VD
Sbjct: 74 GLLAGDIFRRPKANILISVD 93
>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
Length = 966
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 291 EEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEP 413
EEP+ + +G KE+ E RE R H + V+EEP
Sbjct: 840 EEPSDEEESEEAGREKEEEEEDQREGRDHNDDEESVVKEEP 880
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1
Query: 256 DSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVI 435
D Q K E PD+D +E E+E NG+E+ D K + PT DV
Sbjct: 840 DVKQRKRLEQHASYEAPDEDEMEIERE---LQNGLESGDEDDTKADAQRSETNSPTLDVE 896
Query: 436 EQE 444
Q+
Sbjct: 897 TQQ 899
>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
Length = 446
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +1
Query: 217 EDPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHT- 393
E VF +R R + + + TET+E NP D +AE+ + G + T+ K T
Sbjct: 274 EGKSVF-KRNRPTEPASVPSTETKEANPNVTADTKQAEQNEGSMSEGTTSKTITENKTTN 332
Query: 394 -ETCEKNPL 417
ET K L
Sbjct: 333 METLRKEML 341
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 89 LKDLXKVATDLKSQLEGFNTSCLGDVDTNEKIVLRSAEDVATE 217
L DL +V +LKS+ EG CL D++ + + DV E
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKE 1166
>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 271 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEK 408
+HTE + +P P K I+ E +++ + I+ KH+ +CE+
Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCER 257
>SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 111 QQT*RVSSKASTQAVSVTSTPMKRLCFGLLKTSPLRRPRSLYSTVSRS*FEPAEAHRD 284
++T + SSK V ++P R C+G +TS +R T + + H D
Sbjct: 187 EETEKFSSKGKADQVMKAASPAPRACYGCGQTSHIRDCPKKSETTKWCNYHKSSTHSD 244
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 280 ETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA*N 459
+T E++P DK + L+G+ +FD K +H + K IEQ+ ++
Sbjct: 261 KTIEQDPTSDKSYKALRDTTHDLLDGLRDFDQAKEEHAKLIPKYHKIMIKTIEQDPTSDK 320
Query: 460 HY 465
Y
Sbjct: 321 SY 322
>SB_39694| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 893
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 128 QLEGFNTSCLGDVDTNEKIVLRSAEDVATEKTQKSLFDGIE 250
++ G +G VD EKI L A V EK + SLF +E
Sbjct: 52 EISGDEDWWVGRVDGQEKIGLFPANYVTNEKRKSSLFQPLE 92
>SB_45705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 449
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/62 (37%), Positives = 27/62 (43%)
Frame = +1
Query: 217 EDPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 396
E +V RRY E L TQ N + D+ IEAE+ KNK PT T
Sbjct: 82 ESWDVLARRYVE----DLHAKATQLANNVTDQQWIEAEEAKNKVYEEAVQVIPTGTNVT- 136
Query: 397 TC 402
TC
Sbjct: 137 TC 138
>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
Length = 590
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 258 FEPAEAHRDSGEEPASGQRCYRSGEG 335
FEP E H DSG+E Y EG
Sbjct: 266 FEPMEIHDDSGDEDVDSDDDYDDREG 291
>SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 331 SPLR*HLCPEAGSSPESRCASAGSNQLLDTVE 236
SPL C SSP+S+C + S+ + D E
Sbjct: 62 SPLSPESCSIVHSSPDSQCTTPNSSMITDDCE 93
>SB_10367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 27.1 bits (57), Expect = 9.6
Identities = 22/77 (28%), Positives = 30/77 (38%)
Frame = +3
Query: 123 RVSSKASTQAVSVTSTPMKRLCFGLLKTSPLRRPRSLYSTVSRS*FEPAEAHRDSGEEPA 302
R +SK QA K+L + K S + PR S R EPA +R + P
Sbjct: 140 RSASKRRKQAKKKAKNEEKKL-IQIRKESRCKLPRLEESETKRETQEPAPLYRADPQTPQ 198
Query: 303 SGQRCYRSGEGKEQIPE 353
Q K Q+P+
Sbjct: 199 RKQNVALKKPKKHQMPQ 215
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,626,501
Number of Sequences: 59808
Number of extensions: 295170
Number of successful extensions: 1037
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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