Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1218X
         (527 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043434-1|AAC05659.1|  232|Anopheles gambiae putative pupal-spe...    26   0.68 
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      26   0.90 
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   6.3  

>AF043434-1|AAC05659.1|  232|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2d protein.
          Length = 232

 Score = 26.2 bits (55), Expect = 0.68
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = +3

Query: 276 HRDSGEEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISL 455
           H     +   GQ      +G ++I + H +   H    +  VR EP+  K  H   ++  
Sbjct: 110 HETRHGDEVHGQYSLLDSDGHQRIVDYHAD---HHTGFNAVVRREPSAVKIAHPVHKVIA 166

Query: 456 KPLLYNSYSQMYLASIAV 509
           +P+  +SY+   +A   V
Sbjct: 167 QPVHVSSYAHAPVAHATV 184


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 25.8 bits (54), Expect = 0.90
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 385 KHTETCEKNPLPTKDVIEQEKSA*NHYFITVTR 483
           K+T TCE   LP +DV+  + S  + Y +   +
Sbjct: 477 KNTTTCEDYALPYQDVVPSDPSFEDMYAVVCVK 509


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 399 RFRVLQLSGIEVLDAVQEFVLFLLRFDS 316
           R ++  L  +E+++ +Q+F  F   FD+
Sbjct: 7   RVKMFNLKRVEIMNTLQDFEEFTKSFDA 34


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 479,397
Number of Sequences: 2352
Number of extensions: 9101
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 48628785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)