Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1218X
(527 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 56 2e-08
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z80214-3|CAB02265.1| 249|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 28 3.6
AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical ... 28 3.6
AF022981-2|AAG24200.1| 236|Caenorhabditis elegans Hypothetical ... 28 3.6
Z46787-6|CAA86744.1| 392|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z70752-1|CAA94754.1| 410|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z81486-7|CAB03989.1| 480|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z29561-5|CAA82668.1| 395|Caenorhabditis elegans Hypothetical pr... 27 8.3
AF016658-4|AAB66043.1| 242|Caenorhabditis elegans Hypothetical ... 27 8.3
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/61 (47%), Positives = 39/61 (63%)
Frame = +1
Query: 265 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 444
+LK ET EKN LP K+ + EK+ + ++ IE+FD TKL T EK LP+ D I+QE
Sbjct: 23 ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82
Query: 445 K 447
K
Sbjct: 83 K 83
Score = 52.8 bits (121), Expect = 1e-07
Identities = 28/72 (38%), Positives = 39/72 (54%)
Frame = +1
Query: 235 IRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNP 414
I DS++L T +EK LP D I+ EK+ + + I NF LK TET EKN
Sbjct: 51 IHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNV 110
Query: 415 LPTKDVIEQEKS 450
LP+ + +EK+
Sbjct: 111 LPSPTDVAREKT 122
Score = 31.5 bits (68), Expect = 0.39
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 128 QLEGFNTSCLGDVDTNEKIVLRSAEDVATEKTQKSLFDGI 247
++E F+++ L EKIVL SA+D+ EK L D I
Sbjct: 53 EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKI 92
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 83 PSLKDLX--KVATDLKSQLEGFNTSCLGDVDTNEKIVLRSAEDVATEKT 223
PS D+ K +L ++ F + L +T EK VL S DVA EKT
Sbjct: 74 PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +3
Query: 42 KYIDSQWPAR*VTLPP*KTSPRSQQT*RVSSKASTQAVSVTSTPMKRLCFGLLKTSPLRR 221
K +S P+ + P SP +Q K T+A S S+PM G SP+ R
Sbjct: 615 KNFESPLPSSTENVHPASNSPPMKQIEGFEFKTPTRARSALSSPMSNFMNGGDNDSPISR 674
Query: 222 PRS 230
P S
Sbjct: 675 PAS 677
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +3
Query: 42 KYIDSQWPAR*VTLPP*KTSPRSQQT*RVSSKASTQAVSVTSTPMKRLCFGLLKTSPLRR 221
K +S P+ + P SP +Q K T+A S S+PM G SP+ R
Sbjct: 615 KNFESPLPSSTENVHPASNSPPMKQIEGFEFKTPTRARSALSSPMSNFMNGGDNDSPISR 674
Query: 222 PRS 230
P S
Sbjct: 675 PAS 677
>Z80214-3|CAB02265.1| 249|Caenorhabditis elegans Hypothetical
protein T23B5.3c protein.
Length = 249
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +3
Query: 42 KYIDSQWPAR*VTLPP*KTSPRSQQT*RVSSKASTQAVSVTSTPMKRLCFGLLKTSPLRR 221
K +S P+ + P SP +Q K T+A S S+PM G SP+ R
Sbjct: 48 KNFESPLPSSTENVHPASNSPPMKQIEGFEFKTPTRARSALSSPMSNFMNGGDNDSPISR 107
Query: 222 PRS 230
P S
Sbjct: 108 PAS 110
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 28.3 bits (60), Expect = 3.6
Identities = 24/124 (19%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Frame = +1
Query: 82 SLPERPXQGRNRLEESARRL--QHKLSR*RRHQ*KDCASVC*RRRH*EDPEVFIRRYREV 255
S ER Q R ++EE ++ + ++ +R + A + ++ E ++ E
Sbjct: 88 SREEREKQKREKMEEREKQRIERERILEEKRLEKDKLAEEKRLDKEKKEKERLDKKLEED 147
Query: 256 DSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVI 435
+ K E +EK +++ ++ ++E+NK E K + E ++ ++ I
Sbjct: 148 KKKEEKRKEAEEKKKKDEEEKMKKDEERNKRKKEEEEKKEAKRREDEEKKEAKRKEEEAI 207
Query: 436 EQEK 447
E+ K
Sbjct: 208 EERK 211
>AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical
protein F52C6.11 protein.
Length = 304
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +2
Query: 74 SDTPSLKDLXKVATDLKSQLEGFNTSCLGDVDTNEKIVLRSAEDV 208
S S K+ KVA K QLE SCL ++T E+I A D+
Sbjct: 243 SSEKSTKEKLKVAK--KYQLENLKASCLAKINTLEEIKAALAGDL 285
>AF022981-2|AAG24200.1| 236|Caenorhabditis elegans Hypothetical
protein W03F9.2a protein.
Length = 236
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 271 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFD 372
KHTET+++ P +K A+K N L +E N+D
Sbjct: 192 KHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227
>Z46787-6|CAA86744.1| 392|Caenorhabditis elegans Hypothetical
protein C16C10.6 protein.
Length = 392
Score = 27.9 bits (59), Expect = 4.8
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Frame = +1
Query: 112 NRLEESARRLQHKLSR*RRHQ*KDCASVC*RRRH*EDPEVFIR-RYREVDSSQLKHTETQ 288
N ++ ARR + SR R Q ++ +D EVF+ YR+ KH E Q
Sbjct: 105 NIIKAHARRQLEQFSREERQQLREREK---EGDEFDDKEVFVTGAYRKQQEEVKKHRE-Q 160
Query: 289 EKNPLPDKDAIEAEKEK-------NKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQ 441
E D +K+K LN + DPT +K + +KN +D E+
Sbjct: 161 EAEEAAFNDMTSVQKQKLWEIGMGRTLLNDLAR-DPTAIKQRKKEQKNVRKREDSDEE 217
>Z70752-1|CAA94754.1| 410|Caenorhabditis elegans Hypothetical
protein F25B3.2 protein.
Length = 410
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = -2
Query: 205 VFSRPKHNLFIGVDVTETA-CVEAFELTLQVCCDLGEVFQGGSVTHRAGHCESIY 44
VF R + ++F T C + + C DLGE GG+ C +Y
Sbjct: 270 VFGRLRASVFSDAHPTVPGNCALGNFIPVGTCSDLGETIDGGTHESLCSECRGLY 324
>Z81486-7|CAB03989.1| 480|Caenorhabditis elegans Hypothetical
protein C53A5.9 protein.
Length = 480
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 316 AIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLP 420
AI E++ L+ IE FDP KLK + K +P
Sbjct: 427 AIRGYDEESALLDQIERFDPKKLKWSIVPSKPHVP 461
>Z29561-5|CAA82668.1| 395|Caenorhabditis elegans Hypothetical
protein R10E12.2 protein.
Length = 395
Score = 27.1 bits (57), Expect = 8.3
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 220 DPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTET 399
D +R + E + H E ++ P D+++ K K K N T +KHTE
Sbjct: 110 DQSPSVRIFPEEHKKIVAHLEKEKPTGKPPMDSLKI-KVKGKCFNATM----TVIKHTER 164
Query: 400 CEKNPLPTK-DVIEQE 444
C P P + +I QE
Sbjct: 165 CPWCPDPKEITIIGQE 180
>AF016658-4|AAB66043.1| 242|Caenorhabditis elegans Hypothetical
protein B0047.3 protein.
Length = 242
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 86 SLKDLXKVATDLKSQLEGFNTSCLGDVDTNEKIVLRSAEDVA 211
S++DL K+A QLE T CL ++T ++I A + A
Sbjct: 174 SMRDLLKLAKQF--QLENLKTVCLSKINTLDEIEASMAHNPA 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,767,278
Number of Sequences: 27780
Number of extensions: 220173
Number of successful extensions: 810
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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