Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1218X
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    28   0.068
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.5  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   2.6  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   3.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   3.4  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 0.068
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 213 LRRPRSLYSTVSRS*FEPAEAHRDSGEEPASGQR 314
           LRR R L +TV+R+       H DSG   ++ QR
Sbjct: 248 LRRSRMLTATVNRNHLSGGTNHWDSGRRKSAAQR 281


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 68  SVSDTPSLKDLXKVATDLKS 127
           SVS  PS+K + K ATD  S
Sbjct: 156 SVSCVPSVKHVAKCATDFSS 175


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +2

Query: 116 DLKSQLEGFNTSCLGDVDTNEKIV 187
           +LK+ ++     C+G+  T++KI+
Sbjct: 21  ELKTGIQTLQPICVGETGTSQKII 44


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 500 TSEIHLRVTVIK*WFQ 453
           +S +HL  T +K WFQ
Sbjct: 43  SSSLHLTETQVKIWFQ 58


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +1

Query: 223 PEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETC 402
           P+V  +RY++V+ SQ+    +  K+ + +       K K+   + IEN   T+   + T 
Sbjct: 181 PDVEEQRYKQVEISQMTEPSSSTKSYVLEGPRNGKRKRKS---STIENESETESNASSTK 237

Query: 403 EK 408
            K
Sbjct: 238 TK 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,985
Number of Sequences: 438
Number of extensions: 2543
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)