Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1217X
         (491 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2UDG7 Cluster: Predicted protein; n=1; Aspergillus ory...    33   3.5  
UniRef50_UPI0000DA3FE8 Cluster: PREDICTED: hypothetical protein;...    32   6.0  

>UniRef50_Q2UDG7 Cluster: Predicted protein; n=1; Aspergillus
           oryzae|Rep: Predicted protein - Aspergillus oryzae
          Length = 138

 Score = 33.1 bits (72), Expect = 3.5
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -2

Query: 391 CHPIVSIILFIWRH*DKQPIFYVML*HLLSLRR-VKE*RSSAPPPPWTQGEVSIVSGDGC 215
           C  I+ + +F WR  +++             RR V   RS  P   W  GE S + GDGC
Sbjct: 34  CFVIMGLYVFFWRAFERREAQKEKARKERFTRRDVHHERSGIPEKIWCSGESSGLGGDGC 93

Query: 214 P 212
           P
Sbjct: 94  P 94


>UniRef50_UPI0000DA3FE8 Cluster: PREDICTED: hypothetical protein;
           n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 304

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = -2

Query: 280 RSSAPPPPWTQGEVSIVSGDGCPPPSYHQNYTNL*ILH 167
           RSSAPPPP  Q   S V     PPP   Q+ T   +LH
Sbjct: 108 RSSAPPPP-QQSSTSAVLHHSSPPPPLQQSSTTA-VLH 143


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 489,114,095
Number of Sequences: 1657284
Number of extensions: 9976645
Number of successful extensions: 22627
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22605
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28437262108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)