Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1217X
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   2.7  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    25   8.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   8.2  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 393 SVLYVRSCYLVRFVSTHCTTTSQHKHSIKKG 485
           SVL+  + YL +F++   TTTSQ    +  G
Sbjct: 117 SVLHPENSYLTQFIADAPTTTSQRLKGLTTG 147


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 323 NAIASLIAASGEGVEVERAAPAVDTGRS 240
           N+ AS IAA+ +      +A + DTGRS
Sbjct: 190 NSSASAIAAASKSAAASASALSSDTGRS 217


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -2

Query: 265 PPPWTQGEVSIVSGDGCPPP 206
           PPPW     S+ S    P P
Sbjct: 406 PPPWAAASTSVSSSTSSPAP 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,754
Number of Sequences: 5004
Number of extensions: 40337
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)