Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1217X
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0211 - 13043968-13044646,13044752-13045037,13045903-130459...    29   2.7  
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361...    27   8.2  
06_03_0592 + 22585546-22588573,22588680-22589032                       27   8.2  
04_04_0768 - 27954149-27954911,27954955-27955328                       27   8.2  
02_04_0143 + 20172128-20172355,20172452-20173174                       27   8.2  
01_01_0296 + 2433842-2434173,2434738-2434921                           27   8.2  

>06_02_0211 -
           13043968-13044646,13044752-13045037,13045903-13045979,
           13046039-13046139,13046348-13046412,13048296-13048581
          Length = 497

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 23/72 (31%), Positives = 35/72 (48%)
 Frame = +1

Query: 247 PVSTAGAARSTSTPSPDAAIRDAIALHKIWAVYLNGAK*TK*WIL*GDNQFCMFVPVIWL 426
           P + A AARS+ TP+ D+ + +    +K   V L      K   L  +N  C + P   L
Sbjct: 80  PDAAAAAARSSPTPAADSGLSNNYE-YKFDEVNLKQGYQEK-LSLAANN--CQYRPAPCL 135

Query: 427 DSCQLTAQLHRN 462
            +C+LT  LH +
Sbjct: 136 SACELTLWLHND 147


>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
            3611984-3612217,3614113-3614138,3614446-3614633,
            3615707-3617670,3617938-3618423,3618527-3618894
          Length = 2207

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 241  LRPVSTAGAARSTSTPSPDAAIRD-AIALHKIWAVYL 348
            L  V + G + + S+PS   ++++ AI LH+IW  YL
Sbjct: 2168 LLSVLSIGLSCTKSSPSERNSMKEVAIELHRIWDAYL 2204


>06_03_0592 + 22585546-22588573,22588680-22589032
          Length = 1126

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 385 GDNQFCMFVPVIWLDSCQLTAQLHRNINI 471
           G+N  C  VP + + SC + A+  R + I
Sbjct: 736 GNNHLCTSVPKVGIPSCSVLAERKRKLKI 764


>04_04_0768 - 27954149-27954911,27954955-27955328
          Length = 378

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 156 PLNICKIYKFV*FWW*LGGGQPSPDTIETSPCVHGGG 266
           P    K YKFV ++  L GG+P   T++      GGG
Sbjct: 316 PPKTVKGYKFVLYYPDLAGGKPPQYTVDEDGSNSGGG 352


>02_04_0143 + 20172128-20172355,20172452-20173174
          Length = 316

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 196 GGNLGADNRHPTQ*RLRPVSTAGAARSTSTPSPDAAIRD 312
           GG  GA      + R+ P S   AA ++STPSP ++  D
Sbjct: 255 GGGGGAQEVAEEEKRVDPDSVQVAAAASSTPSPPSSADD 293


>01_01_0296 + 2433842-2434173,2434738-2434921
          Length = 171

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +3

Query: 195 WW*LGGGQPSPDTI-ETSPCVHGGGGALDLYSFTR 296
           WW +  G   P  I +  PCV GGGG       TR
Sbjct: 119 WWAILSGAHMPYHIHDLCPCVAGGGGGYGHGDLTR 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,677,992
Number of Sequences: 37544
Number of extensions: 307850
Number of successful extensions: 925
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)