Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1217X
         (491 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028356-1|AAH28356.1|  422|Homo sapiens keratin 23 (histone dea...    31   1.6  
AK002047-1|BAA92054.1|  422|Homo sapiens protein ( Homo sapiens ...    31   1.6  
AF102848-1|AAK00050.1|  422|Homo sapiens keratin 23 protein.           31   1.6  
AK027744-1|BAB55336.1|  258|Homo sapiens protein ( Homo sapiens ...    30   5.0  

>BC028356-1|AAH28356.1|  422|Homo sapiens keratin 23 (histone
           deacetylase inducible) protein.
          Length = 422

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 207 GGGQPSPDTIETSPCVHGG-GGALDLYSFTRRS 302
           GGG   P +   +P VHGG GGA    SFT RS
Sbjct: 19  GGGWGRPRSFPRAPTVHGGAGGARISLSFTTRS 51


>AK002047-1|BAA92054.1|  422|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11185 fis, clone PLACE1007511, weakly similar to
           KERATIN, TYPE I CYTOSKELETAL 19. ).
          Length = 422

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 207 GGGQPSPDTIETSPCVHGG-GGALDLYSFTRRS 302
           GGG   P +   +P VHGG GGA    SFT RS
Sbjct: 19  GGGWGRPRSFPRAPTVHGGAGGARISLSFTTRS 51


>AF102848-1|AAK00050.1|  422|Homo sapiens keratin 23 protein.
          Length = 422

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 207 GGGQPSPDTIETSPCVHGG-GGALDLYSFTRRS 302
           GGG   P +   +P VHGG GGA    SFT RS
Sbjct: 19  GGGWGRPRSFPRAPTVHGGAGGARISLSFTTRS 51


>AK027744-1|BAB55336.1|  258|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14838 fis, clone OVARC1001726, weakly similar to
           APICAL-LIKE PROTEIN. ).
          Length = 258

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 280 RSSAPPPPWTQGEVSIVSGDGCPPPSYH 197
           R  APPPP    E  + S D  PPP  H
Sbjct: 2   RERAPPPPPPSQETPVYSMDDFPPPPPH 29


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,802,261
Number of Sequences: 237096
Number of extensions: 1518317
Number of successful extensions: 2838
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2838
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)