Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1217X
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z82277-2|CAB05250.1|  272|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical p...    28   4.2  
Z68320-2|CAA92706.1|  502|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine d...    27   5.6  
AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine re...    27   5.6  
AL023844-1|CAA19526.1|  401|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 277 SSAPPPPWTQGEVSIVSGDGCPPP 206
           SSAPPPP     VS+ S    PPP
Sbjct: 152 SSAPPPPPPPPPVSVPSSKPTPPP 175


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 277 SSAPPPPWTQGEVSIVSGDGCPPP 206
           SSAPPPP     VS+ S    PPP
Sbjct: 152 SSAPPPPPPPPPVSVPSSKPTPPP 175


>Z82277-2|CAB05250.1|  272|Caenorhabditis elegans Hypothetical
           protein LLC1.2 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/27 (37%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +3

Query: 228 DTIET-SPCVHGGGGALDLYSFTRRSD 305
           +++ET + C+HG  G LD+Y+  +++D
Sbjct: 81  NSLETFNLCMHGNRGCLDIYNLIKKTD 107


>Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical
           protein R11D1.10a protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 226 GDGCPPPSYHQNYTN 182
           GDG PPPS+  ++TN
Sbjct: 88  GDGLPPPSFRNSHTN 102


>Z68320-2|CAA92706.1|  502|Caenorhabditis elegans Hypothetical
           protein W07A12.7 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 63  VVYTTKSPRSMLTVLH*IKYSPPVLLTSKKAPLNICKIYKFV*FWW 200
           VV  T +P S+ + L  +K S   LLT + + L++  I++FV   W
Sbjct: 61  VVIGTLAPVSVFSCLS-LKRSVKELLTERSSKLDVLDIFRFVAILW 105


>U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine dna
           alkyltransferaseprotein 2 protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 247 PVSTAGAARSTSTPSPDAAIRDAIALHK 330
           P+ T G   S++  +P+  +RD +  HK
Sbjct: 110 PIETKGPTPSSTIMNPEVTLRDVLTFHK 137


>AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein7 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 208 PSYHQNYTNL*ILHMFKGAFFDV 140
           PSY  NY N  + H+F G   +V
Sbjct: 41  PSYFNNYRNFLVSHIFSGLLLEV 63


>AL023844-1|CAA19526.1|  401|Caenorhabditis elegans Hypothetical
           protein Y48A6B.1 protein.
          Length = 401

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 380 YRVTISFVCSFLLFG*IRVNSLHNYIAT 463
           Y V   ++C F+ F  + +NSLH Y+ T
Sbjct: 30  YTVLHRYLCLFVCFFGVLLNSLHFYVLT 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,457,174
Number of Sequences: 27780
Number of extensions: 243597
Number of successful extensions: 596
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)