Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1217X
         (491 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47210.1 68416.m05126 expressed protein contains Pfam profile...    29   2.2  
At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent phos...    27   5.2  
At3g03700.1 68416.m00373 expressed protein contains Pfam domain,...    27   6.9  

>At3g47210.1 68416.m05126 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 474

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 274 SAPPPPWTQGE-VSIVSGDGCPPPSYHQNY 188
           S+PPP +  GE     S    PPPS+++ Y
Sbjct: 34  SSPPPSYYMGEKTEKYSSPSSPPPSFYRKY 63


>At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase, putative /
           phosphoglyceromutase, putative strong similarity to
           SP|Q42908 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase (EC 5.4.2.1)
           (Phosphoglyceromutase) {Mesembryanthemum crystallinum};
           contains Pfam profile PF01676: Metalloenzyme superfamily
          Length = 557

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 83  RFCCIHDAPLGALDAARHASVNT 15
           ++ CIH+AP  A+D+ +H + +T
Sbjct: 36  QYNCIHNAPTPAMDSLKHGAPDT 58


>At3g03700.1 68416.m00373 expressed protein contains Pfam domain,
           PF04515: Protein of unknown function, DUF580
          Length = 482

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 295 RVKE*RSSAPPPPWTQGEVSIVSGDGCPPPSYHQNYTNL*ILHMFKGAFF 146
           +++E R  +P PP +   ++     G PPP+  Q         +FKG  F
Sbjct: 14  QIQEPRIMSPLPP-SSSPIAFKEQQGRPPPTTQQTIAGKLFRTLFKGLLF 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,600,427
Number of Sequences: 28952
Number of extensions: 225547
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)