Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1216
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665...    27   9.6  

>06_03_0437 -
           20765682-20765951,20766040-20766294,20766374-20766545,
           20766964-20767097,20767205-20767288,20767369-20767659,
           20767867-20768214,20768321-20768496,20768579-20768695,
           20768780-20768936,20769110-20769225,20769323-20769483,
           20769567-20769883,20769969-20770250,20770347-20770648,
           20771977-20772067,20773203-20773256,20773723-20773812
          Length = 1138

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 358 FILMNIILRI*FALPRPLIVYWVIYCDYTIIF 453
           F L N+ILRI F++   ++  WVI   YTI F
Sbjct: 344 FTLPNVILRIPFSIIESIV--WVIVTYYTIGF 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,405,810
Number of Sequences: 37544
Number of extensions: 200038
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)