Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1216
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93381-1|CAB07604.1|  509|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z29117-13|CAA82377.2|  435|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z77652-10|CAI70404.1|  307|Caenorhabditis elegans Hypothetical p...    27   8.6  
U28941-9|AAC71106.1|  452|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z93381-1|CAB07604.1|  509|Caenorhabditis elegans Hypothetical
           protein F28G4.1 protein.
          Length = 509

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 445 IIFLFNFYFHVYHIGLTDKLRLF*YA---*GDHPFPCFLNIYLTH*FQFSK 588
           +I +F FY+ + +  + D+LR++ Y     G + FP    +Y+ + F  SK
Sbjct: 11  LITIFLFYYKLIYNFIRDRLRIYKYMRKFDGPYSFPIIGTLYMVNIFDISK 61


>Z29117-13|CAA82377.2|  435|Caenorhabditis elegans Hypothetical
           protein C48B4.2 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 352 IFFILMNIILRI*FALPRPLIVYWVIYCDYTIIFLF 459
           IF I+ NI++++   +P  L+  W IY  Y +  LF
Sbjct: 182 IFHIIFNILIQLAIGVPLELVHRWRIYILYFMGVLF 217


>Z77652-10|CAI70404.1|  307|Caenorhabditis elegans Hypothetical
           protein C06B3.12 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 412 IVYWVIYCDYTIIFLFNFYFHVY 480
           IV W++Y  YT++ +F+  F ++
Sbjct: 4   IVRWIVYGSYTLVLIFSTTFLIF 26


>U28941-9|AAC71106.1|  452|Caenorhabditis elegans Hypothetical
           protein F31D5.1 protein.
          Length = 452

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 1   FFFFFFQNDPIALTEK 48
           FFFF+FQN+PI    K
Sbjct: 156 FFFFYFQNEPIEAIAK 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,255,045
Number of Sequences: 27780
Number of extensions: 225571
Number of successful extensions: 407
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)