Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1215
         (584 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7BQ70 Cluster: Putative peptide synthetase/polyketide ...    33   6.6  
UniRef50_O74718 Cluster: Eukaryotic peptide chain release factor...    32   8.7  

>UniRef50_Q7BQ70 Cluster: Putative peptide synthetase/polyketide
            synthase; n=1; Bacillus cereus|Rep: Putative peptide
            synthetase/polyketide synthase - Bacillus cereus
          Length = 2562

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -3

Query: 165  NRTQEQ*ILDEIDLH-KVLRGLNRLNQQKEPTMKTGLR-TPALISATKSPMYKEIK 4
            NR Q+Q ++  IDLH K+L G N  N+  E   K  L+   + +S T  P   EI+
Sbjct: 2409 NRNQQQVVVSPIDLHWKLLNGANYYNELLEKGSKNRLKQNRSDVSTTYRPPTNEIE 2464


>UniRef50_O74718 Cluster: Eukaryotic peptide chain release factor
           GTP-binding subunit; n=2; Schizosaccharomyces pombe|Rep:
           Eukaryotic peptide chain release factor GTP-binding
           subunit - Schizosaccharomyces pombe (Fission yeast)
          Length = 662

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 23/97 (23%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
 Frame = -3

Query: 510 ETGLRTPALISATKSPMYKQSKFI*TFAISETV*KLXCNYKQMEPKNNKTQSEIDLHKVL 331
           ++ ++T  ++++TK+P++  ++FI   AI E    L   Y  +   +   + E+   K+L
Sbjct: 538 DSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVE-EVSFAKLL 596

Query: 330 RGLNRVNQQ-KEPTM--KTGLRTPALISELSPRCTSK 229
             L++ N++ K+P M    G++  A +   +P C  +
Sbjct: 597 HKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMER 633


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,694,233
Number of Sequences: 1657284
Number of extensions: 8343033
Number of successful extensions: 18876
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18873
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)