Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1215
         (584 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.36 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.36 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.1  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 432  FAISETV*KLXCNYKQMEPKNNKTQSEIDLHKVLRGLNRVNQQKEPTMKTGLRTPAL 262
            F++++    + C YK    +N + +    + + LR LNR  +  E      LR+PA+
Sbjct: 1079 FSVNKLFKCMICTYKADNKENEQLRK---IQESLRDLNRKIESLEKMQYPDLRSPAV 1132



 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 126  LHKVLRGLNRLNQQKEPTMKTGLRTPALISAT 31
            + + LR LNR  +  E      LR+PA+ + T
Sbjct: 1105 IQESLRDLNRKIESLEKMQYPDLRSPAVSNVT 1136


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 432  FAISETV*KLXCNYKQMEPKNNKTQSEIDLHKVLRGLNRVNQQKEPTMKTGLRTPAL 262
            F++++    + C YK    +N + +    + + LR LNR  +  E      LR+PA+
Sbjct: 1079 FSVNKLFKCMICTYKADNKENEQLRK---IQESLRDLNRKIESLEKMQYPDLRSPAV 1132



 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 126  LHKVLRGLNRLNQQKEPTMKTGLRTPALISAT 31
            + + LR LNR  +  E      LR+PA+ + T
Sbjct: 1105 IQESLRDLNRKIESLEKMQYPDLRSPAVSNVT 1136


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 381 PFVCNYXIIFKRFQR 425
           PFVCN+    KRF R
Sbjct: 344 PFVCNWLFCGKRFTR 358


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,947
Number of Sequences: 336
Number of extensions: 2227
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)