Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1215
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    32   0.054
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    30   0.22 
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    27   1.5  
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    26   3.5  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   3.5  
SPBC1709.09 |||mitochondrial translation termination factor|Schi...    25   6.2  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   6.2  

>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 32.3 bits (70), Expect = 0.054
 Identities = 23/97 (23%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
 Frame = -3

Query: 510 ETGLRTPALISATKSPMYKQSKFI*TFAISETV*KLXCNYKQMEPKNNKTQSEIDLHKVL 331
           ++ ++T  ++++TK+P++  ++FI   AI E    L   Y  +   +   + E+   K+L
Sbjct: 538 DSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVE-EVSFAKLL 596

Query: 330 RGLNRVNQQ-KEPTM--KTGLRTPALISELSPRCTSK 229
             L++ N++ K+P M    G++  A +   +P C  +
Sbjct: 597 HKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMER 633


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = -3

Query: 435 TFAISETV*KLXCNYKQMEPKNNKTQSEIDLHKVLRGLNRVNQQKEPTMKTGLRTPALIS 256
           TFA  E +     N +Q+EP +N  +S  +LH+VLR L  V  Q   T        AL+ 
Sbjct: 656 TFA-PEILSHFFSNRQQLEPTDNIAESTANLHRVLRSLAIVLPQVGYTQGMSWIAGALLM 714

Query: 255 EL 250
            L
Sbjct: 715 HL 716


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 387 QMEPKNNKTQSEIDLHKVLRGLNRVNQQKEPTMK 286
           + +PK   T+SE++  K   GLN++ ++K   +K
Sbjct: 167 ETDPKYGLTESEVEERKKKYGLNQMKEEKTNNIK 200


>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 393 YKQMEPKNNK---TQSEIDLHKVLRGLNRVNQQKEPTMKT 283
           + +  PK N+   T++EID +K +    ++N    PT  T
Sbjct: 170 FSEQPPKTNEPTETETEIDANKAVEEKTKMNYPASPTFTT 209


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 93  NQQKEPTMKTGLRTPALISATKSPMY 16
           N  + P   TG RTPA  S +K+P +
Sbjct: 823 NGSRTPAWNTGSRTPAWNSGSKTPAW 848


>SPBC1709.09 |||mitochondrial translation termination
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -3

Query: 408 KLXCNYKQMEPKNNKTQSEIDLHKVLRGLNRVNQQKEPTMKTGLRTPALISELSPRCTS 232
           KL  +  +++P+    +S   L KVL G  + ++++   M+T L+     ++ S   TS
Sbjct: 153 KLNASTIEVKPQRTTLESRQQLAKVLEGYAKDSREQLSAMRTELKKEIAKNKKSKAWTS 211


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 446  SLFKHLLSLKPFKNYXVITNKWNPRITK 363
            S   HLLS+       V+ + WNP I K
Sbjct: 1189 SFLVHLLSINSHGKQSVVEDLWNPLILK 1216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,771
Number of Sequences: 5004
Number of extensions: 38171
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)