Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1215
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_13535| Best HMM Match : DUF827 (HMM E-Value=7.8)                    28   6.4  
SB_11667| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-14)                 27   8.5  

>SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 206 SKCLNKPALLVHRGLSSEIKAGVRRPVFMVGSFC*LTRLSPRSTL*RSIS 355
           + CL  P  L+H G   ++K+G     F+   F  LTR  P+ST+  ++S
Sbjct: 64  TNCLG-PRKLLHSGTLFKVKSGKELKAFLFNDFLLLTR--PQSTITGTLS 110


>SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1368

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 384  MEPKNNKTQSE--IDLHKVLRGLNRVNQQKEPTMKTGLR 274
            M PK + +  E  +  +K  R +NR+NQQK      GLR
Sbjct: 1163 MIPKRHASSKENVVPSYKPKRNINRINQQKVQKHMVGLR 1201


>SB_13535| Best HMM Match : DUF827 (HMM E-Value=7.8)
          Length = 154

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = -3

Query: 483 ISATKSPMYKQSKFI*TFAISETV*KLXCNYKQMEPKNNKTQSEIDLHKVLRGLNRVNQQ 304
           +++ + P++K +K     ++ E    L   YK+M  +   +  E DL +V RGL  V ++
Sbjct: 49  LNSLRVPVFKVNKR----SVRERFQLLSEKYKKMSEERKASGIETDLSEVERGLEEVTEK 104

Query: 303 KEPTMKTG 280
           ++   + G
Sbjct: 105 EKEVSEQG 112


>SB_11667| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-14)
          Length = 348

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 278 RPVFMVGSFC*LTRLSPRSTL*RSISLCVLLFLGS 382
           +P+F+      LT + P  TL  +I  CV +F GS
Sbjct: 92  QPLFLAREVTHLTAVGPLCTLENAIHFCVYVFSGS 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,322,991
Number of Sequences: 59808
Number of extensions: 259871
Number of successful extensions: 585
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)