Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1215
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   0.96 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.7  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -1

Query: 563 HKVLRGLNRLNQQKEPTMKLACEPLL*SPQLSPR 462
           H  + G+NR+   + P+ + +CE  +   ++S R
Sbjct: 389 HLKVSGINRVGSTRRPSRRNSCESQMMGDEMSLR 422


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 120 YEDQSHLVFIVLGFYSFVITL 182
           YE +S + F+V   Y+F + L
Sbjct: 324 YEQESKVQFVVDAVYAFALAL 344


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 120 YEDQSHLVFIVLGFYSFVITL 182
           YE +S + F+V   Y+F + L
Sbjct: 414 YEQESKVQFVVDAVYAFALAL 434


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 360 VFCYSWVPFVC 392
           VF   WVPF C
Sbjct: 280 VFLICWVPFFC 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,472
Number of Sequences: 438
Number of extensions: 2585
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)