Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1215
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30020.1 68417.m04272 subtilase family protein contains simil...    29   1.7  
At1g09932.1 68414.m01118 phosphoglycerate/bisphosphoglycerate mu...    29   2.3  
At2g46850.1 68415.m05846 expressed protein                             27   7.0  
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa...    27   9.2  

>At4g30020.1 68417.m04272 subtilase family protein contains
           similarity to meiotic serine proteinase TMP GI:6468325
           from [Lycopersicon esculentum]
          Length = 816

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
 Frame = -3

Query: 399 CNYKQMEPKNNKTQSEIDLH-----KVLRGLNRVNQQKEPTMKTGLRTPALISELS-PRC 238
           CN+K + P N  T S    H      V R +  V +++E    T    PA+  E+S P  
Sbjct: 708 CNFKMVHPSNFNTPSIAISHLVRTQTVTRRVTNVAEEEETYTITSRMEPAIAIEVSPPAM 767

Query: 237 TSKAG 223
           T +AG
Sbjct: 768 TVRAG 772


>At1g09932.1 68414.m01118 phosphoglycerate/bisphosphoglycerate
           mutase-related weak hit to Pfam profile PF00300:
           phosphoglycerate mutase family
          Length = 260

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 384 MEPKNNKTQSE--IDLHKVLRGLNRVNQQKEPTMKTGLRTPALISELSPRC 238
           +E K  K +SE   D H   +GL +V++++   +++GL     +   SP C
Sbjct: 33  LEEKGEKPESEKLFDAHLSPKGLQQVSERRNQILESGLLNTVELVITSPLC 83


>At2g46850.1 68415.m05846 expressed protein 
          Length = 633

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = +2

Query: 191 SSFRDSKCL--NKPALLVHRGLSSEIKAGVRRPVFMVGS----FC*LTR 319
           S F+D K L  +K  +  H G    + AGV  P+F++GS    FC L R
Sbjct: 261 SCFKDGKELYGDKCKIKKHNGKKLTVLAGVLAPLFILGSLLALFCLLKR 309


>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
            profiles: PF04096 nucleoporin autopeptidase, PF03093
            nucleoporin FG repeat family
          Length = 997

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = -3

Query: 351  IDLHKVLRGLNR-----VNQQKEPTMKTGLRTPALISELSPRCTSK 229
            +DL  V++  NR     +++ K+P +  GL  PA+++ L+ +C  K
Sbjct: 894  LDLEMVVQFKNREVNVYMDESKKPPVGQGLNKPAVVTLLNIKCMDK 939


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,847,284
Number of Sequences: 28952
Number of extensions: 190614
Number of successful extensions: 446
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)