Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1214
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    61   3e-08
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther...    48   2e-04
UniRef50_A2DTB0 Cluster: PIKK family atypical protein kinase; n=...    35   2.2  
UniRef50_A1WJ86 Cluster: Putative uncharacterized protein precur...    33   8.9  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score = 60.9 bits (141), Expect = 3e-08
 Identities = 26/46 (56%), Positives = 36/46 (78%)
 Frame = +3

Query: 255  FDKAVRHENPLIVAAGNYIPDPADTM*SSRRRPKYVISDPPDPLTV 392
            FDKA+RH+N LIVAA +Y P+P     S RRRP++V++DP DP+T+
Sbjct: 884  FDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITL 929



 Score = 41.5 bits (93), Expect = 0.019
 Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
 Frame = +1

Query: 157 IAVGAP*FVRNVDLHDNLDLR-VHQYRQSASLRHSIK--RYDTRTL 285
           +AVGAP FVRNVDLHD+L L  + ++ +S S R+  K  R+D R +
Sbjct: 850 LAVGAPWFVRNVDLHDDLGLESIRKHMKSVSERYFDKAMRHDNRLI 895


>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
           mylitta|Rep: Reverse transcriptase-like - Antheraea
           mylitta (Tasar silkworm)
          Length = 186

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 21/47 (44%), Positives = 30/47 (63%)
 Frame = +3

Query: 255 FDKAVRHENPLIVAAGNYIPDPADTM*SSRRRPKYVISDPPDPLTVL 395
           F+KA  H +PL+V+A NY P P       RRRP+++  DPPD +T +
Sbjct: 95  FEKAANHPSPLVVSAANYQPVPNAA--RPRRRPRHIFIDPPDEITAV 139


>UniRef50_A2DTB0 Cluster: PIKK family atypical protein kinase; n=1;
            Trichomonas vaginalis G3|Rep: PIKK family atypical
            protein kinase - Trichomonas vaginalis G3
          Length = 2255

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +1

Query: 214  LRVHQYRQSASLRHSIKRYDTRTLSSWPPVTTFPIL 321
            L V+QY +S SLR  +++  TR L+ +P  T FP+L
Sbjct: 1691 LVVYQYTESQSLRTFVEQILTRLLNEYPNATIFPLL 1726


>UniRef50_A1WJ86 Cluster: Putative uncharacterized protein
           precursor; n=1; Verminephrobacter eiseniae EF01-2|Rep:
           Putative uncharacterized protein precursor -
           Verminephrobacter eiseniae (strain EF01-2)
          Length = 225

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -3

Query: 362 DVFGATSTALHCVRRIGNVVTGGHDERVLVSYRFIEWRSDAD 237
           D F  T +A H   R G + T G D R+ V+ RF++WRS  D
Sbjct: 136 DAFFFTKSAWH---RSGPLKTEGPDFRLAVTIRFLDWRSRLD 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,730,349
Number of Sequences: 1657284
Number of extensions: 13755478
Number of successful extensions: 37831
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37814
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)