Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1214
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.4  
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...    27   3.4  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   4.5  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    26   6.0  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   7.9  

>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 448 KGSASKLTLR-HSLLSLSPDLPVGRLSDPVVDSAKTALARVRVSKI 582
           K +ASK  +   SL++  P+L    +SDP+++  KT   +  V  +
Sbjct: 395 KNTASKQAIESQSLMNSGPELLEPSISDPMLEKMKTDAGKQTVESL 440


>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 256 NGAATPTGDTDGLLSPGCHGGRR 188
           +GA+TPT D DGL  P C G +R
Sbjct: 21  SGASTPTIDLDGLSWP-CQGTQR 42


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/74 (25%), Positives = 29/74 (39%)
 Frame = -2

Query: 264 LYRMAQRRRLAILMDS*VQVVMEVDVPDESRSSDGYPHGGDGYNVVRTPAFLYSREIRRT 85
           LY   ++ ++   + + V    E D+P  S+   G  H   G +    P F     +   
Sbjct: 530 LYGTMKKLKIPFSIPTNVHYSSEKDIPSYSQEYLGKSHYPIGVSSRYLPEFQSDGSVSEK 589

Query: 84  VRALPTWNSIFHSE 43
           VR  P   S FH E
Sbjct: 590 VRLNPLKLSNFHGE 603


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 359 VFGATSTALHCVRRIGNVVT-GGHDERVLVSYRFI 258
           VF + S    C+R I N+VT   +   +LV+Y FI
Sbjct: 81  VFNSASIVAMCLRAILNIVTICSNSYSILVNYGFI 115


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +2

Query: 365 FGSSRSTNGAFRYLKH-RSSFSSNPS--LARRA 454
           FG  R+ N A   L+H RS+ S +PS  L+RR+
Sbjct: 677 FGEQRTENSARESLRHSRSNMSRSPSPMLSRRS 709


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,785
Number of Sequences: 5004
Number of extensions: 51585
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)